RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NCAPG2Q86XI2 1143 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CCDC60Q8IWA6 550 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PCYOX1LQ8NBM8 494 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 MOV10L1Q9BXT6 1211 aaKnown RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 DCLRE1BQ9H816 532 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 IL1RL2Q9HB29 575 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 AS3MTQ9HBK9 375 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 TMEM161AQ9NX61 479 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CFAP65Q6ZU64 1925 aaKnown RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 FCER1AP12319 257 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ST13P50502 369 aaKnown RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 OTUD4Q01804 1114 aaKnown RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 OR6B3Q8NGW1 331 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 GLMNQ92990 594 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 CATSPER2Q96P56 530 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 DENND4BO75064 1496 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF200P98182 395 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ADRM1Q16186 407 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF667Q5HYK9 610 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 MAGEB5Q9BZ81 275 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF408Q9H9D4 720 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 CDYLQ9Y232 598 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 WDR17Q8IZU2 1322 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF839A8K0R7 811 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 HNRNPRO43390 633 aaKnown RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ATP9BO43861 1147 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 HOXA13P31271 388 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 TXNRD1Q16881 649 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 C3orf20Q8ND61 904 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 CCNL1Q9UK58 526 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF521Q96K83 1311 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 FAM95CA0A1B0GW59 222 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 AP1G2O75843 785 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 USP1O94782 785 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 PTK7Q13308 1070 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 COBLL1Q53SF7 1204 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 LAYNQ6UX15 382 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 CCDC149Q6ZUS6 474 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 SHCBP1LQ9BZQ2 653 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 STK36Q9NRP7 1315 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 USP17L8P0C7I0 530 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 C6orf10Q5SRN2 563 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 MMGT1Q8N4V1 131 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 DYNLL2Q96FJ2 89 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 USE1Q9NZ43 259 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF212Q9UDV6 495 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 TEX14Q8IWB6 1497 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 BNIP3LO60238 219 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 GSNP06396 782 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 KRR1Q13601 381 aaKnown RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ANGPT1Q15389 498 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 KCTD21Q4G0X4 260 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 SLFN12LQ6IEE8 588 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 PPP1R16BQ96T49 567 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 AGPAT1Q99943 283 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF556Q9HAH1 456 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 HEY2Q9UBP5 337 aa12.47□□□□□ -0.41
SYNPO-202ENST00000394243 XPO7Q9UIA9 1087 aaKnown RBP12.47□□□□□ -0.41
SYNPO-202ENST00000394243 UBA6A0AVT1 1052 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PP2D1A8MPX8 630 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 DNALI1O14645 258 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 COPAP53621 1224 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PDAP1Q13442 181 aaKnown RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 JAMLQ86YT9 394 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 CDKL3Q8IVW4 592 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 OR6P1Q8NGX9 317 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 ITIH6Q6UXX5 1313 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 OVGP1Q12889 678 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 TRADDQ15628 312 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 OASLQ15646 514 aaKnown RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 CYB5R4Q7L1T6 521 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PDCD6IPQ8WUM4 868 aaKnown RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 ZCWPW1Q9H0M4 648 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 DDX18Q9NVP1 670 aaKnown RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 AIPL1Q9NZN9 384 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PHTF1Q9UMS5 762 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PNMA6FA0A0J9YX94 578 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 ZBTB24O43167 697 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 RTN2O75298 545 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 SESN2P58004 480 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 CCDC17Q96LX7 622 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 DAPK2Q9UIK4 370 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PRDM4Q9UKN5 801 aa12.46□□□□□ -0.41
SYNPO-202ENST00000394243 ZMYND8Q9ULU4 1186 aaPredicted RBP12.46□□□□□ -0.41
SYNPO-202ENST00000394243 PLXNC1O60486 1568 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 E2F8A0AVK6 867 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 ZBTB39O15060 712 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 KCNN4O15554 427 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 CHI3L2Q15782 390 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 IZUMO2Q6UXV1 221 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 C3orf62Q6ZUJ4 267 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 KLHL4Q9C0H6 718 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 SOX13Q9UN79 622 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 PZPP20742 1482 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 H3BQF6 201 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 AP3B1O00203 1094 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 SASH1O94885 1247 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 R3HDM1Q15032 1099 aaKnown RBP12.46□□□□□ -0.42
SYNPO-202ENST00000394243 FAM162AQ96A26 154 aa12.46□□□□□ -0.42
SYNPO-202ENST00000394243 RPAP1Q9BWH6 1393 aaPredicted RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms