RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SLC18A1P54219 525 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 NCALDP61601 193 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 MAP2K1Q02750 393 aaPredicted RBP10.68□□□□□ -0.7
COL17A1-203ENST00000393211 STRN3Q13033 797 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 CLEC16AQ2KHT3 1053 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 ZNF746Q6NUN9 644 aaPredicted RBP10.68□□□□□ -0.7
COL17A1-203ENST00000393211 PPP1R2P3Q6NXS1 205 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 SPATA21Q7Z572 469 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 KIAA0825Q8IV33 1275 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 PPM1KQ8N3J5 372 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 MAB21L3Q8N8X9 362 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 N4BP2L2Q92802 583 aaPredicted RBP10.68□□□□□ -0.7
COL17A1-203ENST00000393211 MAGEB18Q96M61 343 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 ANKRD27Q96NW4 1050 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 NT5C1BQ96P26 610 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 CBWD1Q9BRT8 395 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 TRIM7Q9C029 511 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 CCDC113Q9H0I3 377 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 PCIF1Q9H4Z3 704 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 UBN1Q9NPG3 1134 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 BAIAP2L1Q9UHR4 511 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 PTPN22Q9Y2R2 807 aa10.68□□□□□ -0.7
COL17A1-203ENST00000393211 TCP11X1B4DZS4 312 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 NDC80O14777 642 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 CLDN3O15551 220 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 TOM1O60784 492 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ATP5HO75947 161 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 WFS1O76024 890 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 UBOX5O94941 541 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ATF2P15336 505 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 MAPK4P31152 587 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 QARSP47897 775 aaKnown RBP10.67□□□□□ -0.7
COL17A1-203ENST00000393211 IFNAR2P48551 515 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 RARRES1P49788 294 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 CACNB3P54284 484 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 BPIFB4P59827 614 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 GHRHRQ02643 423 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 GCNT1Q02742 428 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 AOC3Q16853 763 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 LONRF1Q17RB8 773 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 CC2D2BQ6DHV5 1058 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 SLC47A2Q86VL8 602 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 CCDC25Q86WR0 208 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ANKRD35Q8N283 1001 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 FBXL13Q8NEE6 735 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 PLEKHO2Q8TD55 490 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 HELQQ8TDG4 1101 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 PARD3BQ8TEW8 1205 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 DDX1Q92499 740 aaKnown RBP10.67□□□□□ -0.7
COL17A1-203ENST00000393211 MASTLQ96GX5 879 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 DCLK3Q9C098 648 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ECT2Q9H8V3 914 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 PPCSQ9HAB8 311 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ARHGEF3Q9NR81 526 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ABCF3Q9NUQ8 709 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 MAP3K20Q9NYL2 800 aaKnown RBP10.67□□□□□ -0.7
COL17A1-203ENST00000393211 NKIRAS1Q9NYS0 192 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ASIC3Q9UHC3 531 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 ANAPC5Q9UJX4 755 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 FEM1BQ9UK73 627 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 USP21Q9UK80 565 aa10.67□□□□□ -0.7
COL17A1-203ENST00000393211 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.67□□□□□ -0.7
COL17A1-203ENST00000393211 THAP12O43422 761 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 GRIN3BO60391 1043 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ONECUT3O60422 494 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CLTAP09496 248 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ABCD1P33897 745 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KCNJ1P48048 391 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 JAG1P78504 1218 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 PPARDQ03181 441 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 SNRNP35Q16560 246 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CCNG2Q16589 344 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 FAM133BQ5BKY9 247 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 NUGGCQ68CJ6 796 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ASRGL1Q7L266 308 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 TBC1D1Q86TI0 1168 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 C4orf19Q8IY42 314 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 NLGN1Q8N2Q7 840 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CCDC89Q8N998 374 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 UHMK1Q8TAS1 419 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 TCP11Q8WWU5 503 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KAT5Q92993 513 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 L3MBTL3Q96JM7 780 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MFSD14AQ96MC6 490 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 FBXL18Q96ME1 805 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 DDX23Q9BUQ8 820 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MTFR1LQ9H019 292 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ANKEF1Q9NU02 776 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 TBC1D22BQ9NU19 505 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 FGFR1OP2Q9NVK5 253 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 NOP53Q9NZM5 478 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 KLHL14Q9P2G3 628 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ZHX2Q9Y6X8 837 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 MAGEB2O15479 319 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 DHX15O43143 795 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 PSTPIP1O43586 416 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 ACSL3O95573 720 aa10.66□□□□□ -0.7
COL17A1-203ENST00000393211 DLATP10515 647 aaKnown RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 UNGP13051 313 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-203ENST00000393211 CCNB1P14635 433 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms