RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 NDUFA10O95299 355 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 IVLP07476 585 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 ACOT2P49753 483 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 VAMP7P51809 220 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 ACLYP53396 1101 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 SLC9C1Q4G0N8 1177 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 WDR93Q6P2C0 686 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 ZNF410Q86VK4 478 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 FAM71BQ8TC56 605 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 CCDC127Q96BQ5 260 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 OSMRQ99650 979 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.45□□□□□ -0.26
CIITA-202ENST00000381835 UNC93B1Q9H1C4 597 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 CDHR5Q9HBB8 845 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 FAM207AQ9NSI2 230 aaPredicted RBP13.45□□□□□ -0.26
CIITA-202ENST00000381835 A0A0B4J269 797 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 MYO1CO00159 1063 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 PHACTR2O75167 634 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 GPR32O75388 356 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 FGFR4P22455 802 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 KCNMA1Q12791 1236 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 SEZ6Q53EL9 994 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 ATF7IP2Q5U623 682 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 IFNLR1Q8IU57 520 aaPredicted RBP13.44□□□□□ -0.26
CIITA-202ENST00000381835 PLEKHO2Q8TD55 490 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 FBXL18Q96ME1 805 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 RASSF4Q9H2L5 321 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 ADAMTS10Q9H324 1103 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 TRIM10Q9UDY6 481 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 LCMT1Q9UIC8 334 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 SIK3Q9Y2K2 1263 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 GRIN2DO15399 1336 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 ZNF233A6NK53 670 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 LRRIQ3A6PVS8 624 aaPredicted RBP13.44□□□□□ -0.26
CIITA-202ENST00000381835 RBAK-RBAKDNI3L0D1 243 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 MAPK13O15264 365 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 EXTL3O43909 919 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 ERLIN2O94905 339 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 MTFR1Q15390 333 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 TSR1Q2NL82 804 aaKnown RBP13.44□□□□□ -0.26
CIITA-202ENST00000381835 ZBTB41Q5SVQ8 909 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 TSHZ1Q6ZSZ6 1077 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 C10orf67Q8IYJ2 551 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 OR8K1Q8NGG5 319 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 CPB2Q96IY4 423 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 HAUS4Q9H6D7 363 aa13.44□□□□□ -0.26
CIITA-202ENST00000381835 TTC26A0AVF1 554 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 VGLL3A8MV65 326 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 ENC1O14682 589 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 FMO5P49326 533 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 CDC42EP1Q00587 391 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 ITGA7Q13683 1181 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 AMHR2Q16671 573 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 FAM187BQ17R55 369 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 ZNF568Q3ZCX4 644 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 EEF1DP3Q658K8 133 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 TAF2Q6P1X5 1199 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 SRLQ86TD4 932 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 GLT1D1Q96MS3 346 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 POP1Q99575 1024 aaKnown RBP13.43□□□□□ -0.26
CIITA-202ENST00000381835 GCOM2Q9BZD3 368 aaPredicted RBP13.43□□□□□ -0.26
CIITA-202ENST00000381835 KIAA1586Q9HCI6 787 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 MED4Q9NPJ6 270 aa13.43□□□□□ -0.26
CIITA-202ENST00000381835 LUC7L2Q9Y383 392 aaKnown RBP13.43□□□□□ -0.26
CIITA-202ENST00000381835 REXO2Q9Y3B8 237 aaKnown RBP13.43□□□□□ -0.26
CIITA-202ENST00000381835 KIAA0391O15091 583 aaKnown RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 EPHB6O15197 1021 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 LDHAP00338 332 aaKnown RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 DLATP10515 647 aaKnown RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 ARF4P18085 180 aaPredicted RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 APBA1Q02410 837 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CYP24A1Q07973 514 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CBWD6Q4V339 395 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CBWD3Q5JTY5 395 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CBWD5Q5RIA9 395 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 MPZL3Q6UWV2 235 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CRELD2Q6UXH1 353 aaPredicted RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 TRAPPC11Q7Z392 1133 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 ARRDC4Q8NCT1 418 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 PARD3BQ8TEW8 1205 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 MFSD14AQ96MC6 490 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 LSM14BQ9BX40 385 aaKnown RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 AGPAT5Q9NUQ2 364 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 RRP15Q9Y3B9 282 aaKnown RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 MOXD2PA6NHM9 499 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 ABLIM1O14639 778 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CABYRO75952 493 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 GCLMP48507 274 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 MCL1Q07820 350 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 PPP3CAQ08209 521 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 EXOC3L4Q17RC7 722 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 C1orf220Q5T0J3 134 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CCDC122Q5T0U0 273 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 NME8Q8N427 588 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 NUP58Q9BVL2 599 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 PTPRHQ9HD43 1115 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 RNF216Q9NWF9 866 aaPredicted RBP13.42□□□□□ -0.26
CIITA-202ENST00000381835 GCNT4Q9P109 453 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 TNFSF13BQ9Y275 285 aa13.42□□□□□ -0.26
CIITA-202ENST00000381835 CNTNAP2Q9UHC6 1331 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms