RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 RASGRF2O14827 1237 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 CLDN3O15551 220 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 DRG2P55039 364 aaKnown RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 SEL1L2Q5TEA6 688 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 FKBP1CQ5VVH2 108 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 PPM1KQ8N3J5 372 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 ATG4AQ8WYN0 398 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 KREMEN1Q96MU8 473 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 A1CFQ9NQ94 594 aaKnown RBP17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 PGAP2Q9UHJ9 254 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 AGAP1Q9UPQ3 857 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 PFASO15067 1338 aa17.42■□□□□ 0.38
NKX3-1-201ENST00000380871 HGSO14964 777 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 TP73O15350 636 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 COILP38432 576 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 PREPLQ4J6C6 727 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 SPDYCQ5MJ68 293 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 DAB2IPQ5VWQ8 1189 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 PIGWQ7Z7B1 504 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 TCP11Q8WWU5 503 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 CD101Q93033 1021 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 PDCD2LQ9BRP1 358 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 STRA6Q9BX79 667 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 TRIM7Q9C029 511 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 SEL1LQ9UBV2 794 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 NOCTQ9UK39 431 aaKnown RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 MIF4GDA9UHW6 222 aaKnown RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 CHKAP35790 457 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 ELF3P78545 371 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 ADCY1Q08828 1119 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 EPC2Q52LR7 807 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 NLRX1Q86UT6 975 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 SLC13A5Q86YT5 568 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 ZNF564Q8TBZ8 553 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 KIAA1683Q9H0B3 1180 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 GABBR1Q9UBS5 961 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 MTRF1LQ9UGC7 380 aaKnown RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 ODF2LQ9ULJ1 636 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 PPP2R5EQ16537 467 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 EXOC3L1Q86VI1 746 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 DHX38Q92620 1227 aaKnown RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 SEMA4DQ92854 862 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 CEP170P1Q96L14 293 aa17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 TOPORSQ9NS56 1045 aaPredicted RBP17.41■□□□□ 0.38
NKX3-1-201ENST00000380871 ADRB2P07550 413 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 CNGA2Q16280 664 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 C2CD6Q53TS8 623 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 SWSAP1Q6NVH7 229 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 TBC1D1Q86TI0 1168 aaPredicted RBP17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 TAX1BP1Q86VP1 789 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 CBWD2Q8IUF1 395 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 FAM118BQ9BPY3 351 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 TMEM117Q9H0C3 514 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 CDC42EP4Q9H3Q1 356 aaKnown RBP17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 AAASQ9NRG9 546 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 BAIAP2L1Q9UHR4 511 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 UBIAD1Q9Y5Z9 338 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 AGTP01019 485 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 ADCY2Q08462 1091 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 C6orf118Q5T5N4 469 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 LMBRD2Q68DH5 695 aaPredicted RBP17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 LLGL2Q6P1M3 1020 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 SEPT14Q6ZU15 432 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 ZNF653Q96CK0 615 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 HERPUD2Q9BSE4 406 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 HSPBP1Q9NZL4 362 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 MCM8Q9UJA3 840 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 SYNPO2Q9UMS6 1093 aa17.4■□□□□ 0.38
NKX3-1-201ENST00000380871 VWA5AO00534 786 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 RTN2O75298 545 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 NR3C2P08235 984 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 VPS41P49754 854 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 HADHBP55084 474 aaKnown RBP17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 FMO1Q01740 532 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 PNMA8AQ86V59 439 aaPredicted RBP17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 ANKS4BQ8N8V4 417 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 LPAR1Q92633 364 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 ART4Q93070 314 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 BICD1Q96G01 975 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 ACCSQ96QU6 501 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 FGFR1OP2Q9NVK5 253 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 SAMD15Q9P1V8 674 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 SLC12A4Q9UP95 1085 aa17.39■□□□□ 0.38
NKX3-1-201ENST00000380871 DNAJC8O75937 253 aaPredicted RBP17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 GH1P01241 217 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 CLTAP09496 248 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 PCNX4Q63HM2 1172 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 CYFIP1Q7L576 1253 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 ANKRD42Q8N9B4 389 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 PXMP2Q9NR77 195 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 UBE4BO95155 1302 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 PODXLO00592 558 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 ASAP2O43150 1006 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 INTS8Q75QN2 995 aaKnown RBP17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 EEPD1Q7L9B9 569 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 SLC9A9Q8IVB4 645 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 ZBED3Q96IU2 234 aaPredicted RBP17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 CHST7Q9NS84 486 aa17.39■□□□□ 0.37
NKX3-1-201ENST00000380871 MGRN1O60291 552 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms