RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GLRA2P23416 452 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 CTNNA2P26232 953 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 EMC2Q15006 297 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 BRDTQ58F21 947 aaPredicted RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 TDRD10Q5VZ19 366 aaKnown RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 JAMLQ86YT9 394 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 SLC17A8Q8NDX2 589 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 NLGN2Q8NFZ4 835 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 CCDC26Q8TAB7 109 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 ZNF653Q96CK0 615 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 C17orf75Q9HAS0 396 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 APOBEC3GQ9HC16 384 aaKnown RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 DIS3Q9Y2L1 958 aaKnown RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 MAFBQ9Y5Q3 323 aaPredicted RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 KIAA0391O15091 583 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 IVLP07476 585 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 CLDN10P78369 228 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 EMC10Q5UCC4 262 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 KDM7AQ6ZMT4 941 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 ERP44Q9BS26 406 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 GRHL1Q9NZI5 618 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 BTBD7Q9P203 1132 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 SNX24Q9Y343 169 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 C19orf81C9J6K1 198 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 USP2O75604 605 aaPredicted RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 ATG7O95352 703 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 C4BPAP04003 597 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 UNGP13051 313 aaPredicted RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 GARTP22102 1010 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 RTP1P59025 263 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 DHX9Q08211 1270 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 CHADLQ6NUI6 762 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 SEPT14Q6ZU15 432 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 UBLCP1Q8WVY7 318 aaPredicted RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 PSPC1Q8WXF1 523 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 CPA5Q8WXQ8 436 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 BICD1Q96G01 975 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 RPS6KC1Q96S38 1066 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 UTP11Q9Y3A2 253 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 KRT5P13647 590 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 CTNNA1P35221 906 aaKnown RBP14.36□□□□□ -0.11
CCDC3-202ENST00000378839 CLEC16AQ2KHT3 1053 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 ACAD10Q6JQN1 1059 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 MCPH1Q8NEM0 835 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 VTI1AQ96AJ9 217 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 UMODL1Q5DID0 1318 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 MYPNQ86TC9 1320 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 LTBP3Q9NS15 1303 aa14.36□□□□□ -0.11
CCDC3-202ENST00000378839 MYO1CO00159 1063 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 O00370 1275 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 SHBGP04278 402 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 RARAP10276 462 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 GTF2H1P32780 548 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 CCT5P48643 541 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 PDE6CP51160 858 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 DHX33Q9H6R0 707 aaKnown RBP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 CNOT8Q9UFF9 292 aaKnown RBP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 PNMA2Q9UL42 364 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 STYXL1Q9Y6J8 313 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 POLR2AP24928 1970 aaKnown RBP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 MROH7Q68CQ1 1323 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 NR1D1P20393 614 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 ACO1P21399 889 aaKnown RBP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 RPL21P46778 160 aaKnown RBP14.35□□□□□ -0.11
CCDC3-202ENST00000378839 KCNJ1P48048 391 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 XKR3Q5GH77 459 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 LRIG3Q6UXM1 1119 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 GTF3C4Q9UKN8 822 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 SNCAIPQ9Y6H5 919 aa14.35□□□□□ -0.11
CCDC3-202ENST00000378839 GSTTP1A0A1W2PQM5 241 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 TP73O15350 636 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 EXTL3O43909 919 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 PHF2O75151 1096 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 PPFIA2O75334 1257 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 ARL2P36404 184 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 MIS18BP1Q6P0N0 1132 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 FBXO25Q8TCJ0 367 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 BCAS4Q8TDM0 211 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 PORCNQ9H237 461 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 RASSF4Q9H2L5 321 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 CENPHQ9H3R5 247 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 GPRC5DQ9NZD1 345 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 ATP8A1Q9Y2Q0 1164 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 MIF4GDA9UHW6 222 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 HLA-DRAP01903 254 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 POLGP54098 1239 aaPredicted RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 GCNT1Q02742 428 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 PSMD6Q15008 389 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 ZACNQ401N2 412 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 C1orf131Q8NDD1 294 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 OR5B17Q8NGF7 314 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 TARS2Q9BW92 718 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 ZNF302Q9NR11 478 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 CWC15Q9P013 229 aaKnown RBP14.34□□□□□ -0.11
CCDC3-202ENST00000378839 IGKV6D-21A0A0A0MT36 114 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 SOWAHBA6NEL2 793 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 OATP04181 439 aa14.34□□□□□ -0.11
CCDC3-202ENST00000378839 SIP14410 1827 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms