RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CATSPER3Q86XQ3 398 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UNC45BQ8IWX7 931 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RASGEF1AQ8N9B8 481 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TEX19Q8NA77 164 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TPCN2Q8NHX9 752 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 DDI1Q8WTU0 396 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ULK4Q96C45 1275 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 UROC1Q96N76 676 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 FAM124BQ9H5Z6 455 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 NSUN3Q9H649 340 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 C8orf33Q9H7E9 229 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 SUCLA2Q9P2R7 463 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 DEC1Q9P2X7 70 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 STK17AQ9UEE5 414 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 MRPS33Q9Y291 106 aaKnown RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 SLC30A1Q9Y6M5 507 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 NEMFO60524 1076 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RTN3O95197 1032 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 ADCY5O95622 1261 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CAVIN2O95810 425 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 PLA2G4BP0C869 781 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 GRK2P25098 689 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 BACE1P56817 501 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 HPCAP84074 193 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CCDC38Q502W7 563 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ANO1Q5XXA6 986 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 LLGL2Q6P1M3 1020 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 ZNF852Q6ZMS4 543 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 MMS22LQ6ZRQ5 1243 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 NEK8Q86SG6 692 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 SLC51AQ86UW1 340 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 NLRP10Q86W26 655 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 LSMEM2Q8N112 164 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 TAB3Q8N5C8 712 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 CCDC185Q8N715 623 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.35□□□□□ -1.71
USH2A-202ENST00000366942 EPAS1Q99814 870 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 VCPKMTQ9H867 229 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 CYLDQ9NQC7 956 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 RAB20Q9NX57 234 aa4.35□□□□□ -1.71
USH2A-202ENST00000366942 EFCAB8A8MWE9 144 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 KERAO60938 352 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CSH1P0DML2 217 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CSH2P0DML3 217 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TGFB3P10600 412 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ADKP55263 362 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 YWHAHQ04917 246 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 FBXO43Q4G163 708 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 GIMAP6Q6P9H5 292 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 FRA10AC1Q70Z53 315 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 RRM2BQ7LG56 351 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 OTOP2Q7RTS6 562 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 RDM1Q8NG50 284 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 NXPE3Q969Y0 559 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 HEXIM2Q96MH2 286 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 KDM4CQ9H3R0 1056 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CENPHQ9H3R5 247 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 AGPAT4Q9NRZ5 378 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ARL15Q9NXU5 204 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 GULP1Q9UBP9 304 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 BCAP29Q9UHQ4 241 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ANAPC2Q9UJX6 822 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 PADI2Q9Y2J8 665 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ZBTB12Q9Y330 459 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 GOLGA8TH3BQL2 631 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 FGAP02671 866 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ZNF853P0CG23 659 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CYP2A6P11509 494 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 CASP14P31944 242 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 MCM7P33993 719 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 NSFP46459 744 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 SIM2Q14190 667 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 GOLGA7BQ2TAP0 167 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TCHHL1Q5QJ38 904 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 FAAH2Q6GMR7 532 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 ITPRIPL1Q6GPH6 555 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 PPP1R18Q6NYC8 613 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 GET4Q7L5D6 327 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 BEND7Q8N7W2 519 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 TCEANC2Q96MN5 208 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 KRT12Q99456 494 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 TRMT61BQ9BVS5 477 aaKnown RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 JPH1Q9HDC5 661 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 PSD3Q9NYI0 1048 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 H2AFY2Q9P0M6 372 aaPredicted RBP4.34□□□□□ -1.71
USH2A-202ENST00000366942 A8MXQ7 604 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 RASSF9O75901 435 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 CIAO1O76071 339 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 BAIAP3O94812 1187 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 VEGFBP49765 207 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 MFAP3P55082 362 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 PSMC5P62195 406 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 PPP2R2BQ00005 443 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 RAPGEF1Q13905 1077 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 UBE3CQ15386 1083 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 DIXDC1Q155Q3 683 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 LYPLAL1Q5VWZ2 237 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 SPECC1LQ69YQ0 1117 aa4.34□□□□□ -1.71
USH2A-202ENST00000366942 IYDQ6PHW0 289 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms