RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 THAP9Q9H5L6 903 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 DHX33Q9H6R0 707 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 XPNPEP1Q9NQW7 623 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 NRBP2Q9NSY0 501 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 SEPT9Q9UHD8 586 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 FAM153AQ9UHL3 310 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 UBE4BO95155 1302 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 SFI1A8K8P3 1242 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 USO1O60763 962 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 PLS3P13797 630 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 TRADDQ15628 312 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 ENOX2Q16206 610 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 GJC2Q5T442 439 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 KSR1Q8IVT5 923 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 MYCT1Q8N699 235 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 SH2D3AQ9BRG2 576 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 PPP1R12CQ9BZL4 782 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 SMARCAD1Q9H4L7 1026 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 AZI2Q9H6S1 392 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 C17orf75Q9HAS0 396 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 TBC1D7Q9P0N9 293 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 Q9Y3F1 56 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 ZBTB42B2RXF5 422 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 OPA1O60313 960 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 ABL2P42684 1182 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 SLC8A3P57103 927 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 TBX2Q13207 712 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 CCDC122Q5T0U0 273 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 CWF19L1Q69YN2 538 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 CPLX4Q7Z7G2 160 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 CCDC50Q8IVM0 306 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 MCPH1Q8NEM0 835 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 ATP8B4Q8TF62 1192 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 NTPCRQ9BSD7 190 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 UBE2OQ9C0C9 1292 aaKnown RBP10.87□□□□□ -0.67
SYNE1-203ENST00000354674 GABRQQ9UN88 632 aa10.87□□□□□ -0.67
SYNE1-203ENST00000354674 MYH11P35749 1972 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-203ENST00000354674 MYBP10242 640 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 RFC5P40937 340 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 TNFAIP2Q03169 654 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 PLCB4Q15147 1175 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 PRAMEF19Q5SWL8 479 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 ARHGAP22Q7Z5H3 698 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 KIFAP3Q92845 792 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 MMADHCQ9H3L0 296 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-203ENST00000354674 LARSQ9P2J5 1176 aaKnown RBP10.86□□□□□ -0.67
SYNE1-203ENST00000354674 LIMA1Q9UHB6 759 aaKnown RBP10.86□□□□□ -0.67
SYNE1-203ENST00000354674 TRAF3IP3Q9Y228 551 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 GOLGA8KD6RF30 607 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 RNF8O76064 485 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 PAX3P23760 479 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 NCKAP1LP55160 1127 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 DBN1Q16643 649 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 ODR4Q5SWX8 454 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 RNF220Q5VTB9 566 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 PPP4R3CPQ6ZMV5 832 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 ERICH1Q86X53 443 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 AFG1LQ8WV93 481 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 TEKT4Q8WW24 435 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 C16orf70Q9BSU1 422 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 ZHX3Q9H4I2 956 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 SAGE1Q9NXZ1 904 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 NFU1Q9UMS0 254 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 C2CD2Q9Y426 696 aa10.86□□□□□ -0.67
SYNE1-203ENST00000354674 A6NJR5 290 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MAFO75444 373 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-203ENST00000354674 LGALS2P05162 132 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 NFIL3Q16649 462 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 KNOP1Q1ED39 458 aaKnown RBP10.85□□□□□ -0.67
SYNE1-203ENST00000354674 CFAP58Q5T655 872 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 LRRC55Q6ZSA7 311 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 FAM178BQ8IXR5 827 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TMEM174Q8WUU8 243 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 SPIRE2Q8WWL2 714 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 BLOC1S6Q9UL45 172 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 FAM184BQ9ULE4 1060 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 ZMYM2Q9UBW7 1377 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 IGKV6-21A0A0C4DH24 114 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 PDXKO00764 312 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TRPA1O75762 1119 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MMP3P08254 477 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 CYBAP13498 195 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 NMT1P30419 496 aaKnown RBP10.85□□□□□ -0.67
SYNE1-203ENST00000354674 FLT3LGP49771 235 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 GTF2BQ00403 316 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 CYP27A1Q02318 531 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MTA1Q13330 715 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 ALCAMQ13740 583 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 EDRF1Q3B7T1 1238 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MTERF2Q49AM1 385 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TCP11X2Q5H9J9 407 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TRIM50Q86XT4 487 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 MAB21L3Q8N8X9 362 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TRPV1Q8NER1 839 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 TRIB2Q92519 343 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 GLG1Q92896 1179 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 GPRC5CQ9NQ84 441 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 ERAP1Q9NZ08 941 aa10.85□□□□□ -0.67
SYNE1-203ENST00000354674 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms