RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 AGPAT1Q99943 283 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 HERPUD2Q9BSE4 406 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 PPP1R12CQ9BZL4 782 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 INTS2Q9H0H0 1204 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 CYLDQ9NQC7 956 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 CHST7Q9NS84 486 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 KANSL3Q9P2N6 904 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 ASIC3Q9UHC3 531 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 RPL26L1Q9UNX3 145 aaKnown RBP7.25□□□□□ -1.25
VPS39-202ENST00000348544 BCS1LQ9Y276 419 aa7.25□□□□□ -1.25
VPS39-202ENST00000348544 hCG_1984214I3L0E3 225 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 CDH16O75309 829 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 GSTA2P09210 222 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SERPINB4P48594 390 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 LMNB2Q03252 620 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SPIRE1Q08AE8 756 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 USP4Q13107 963 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 TCEAL1Q15170 157 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 BICDL1Q6ZP65 573 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 LRRC74BQ6ZQY2 392 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 RGS9BPQ6ZS82 235 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 NBPF5PQ86XG9 351 aaPredicted RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 CCDC125Q86Z20 511 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 FAM186BQ8IYM0 893 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 ZNF713Q8N859 430 aaPredicted RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 PSPC1Q8WXF1 523 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 SNF8Q96H20 258 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 C9orf72Q96LT7 481 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 PCDHB18PQ96TA0 734 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 KRT82Q9NSB4 513 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 APEX2Q9UBZ4 518 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 LNPEPQ9UIQ6 1025 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 MTUS1Q9ULD2 1270 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 ACTL7BQ9Y614 415 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 TOM1O60784 492 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 GCNT3O95395 438 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 LMNAP02545 664 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31C1P0DKV0 1188 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 ITIH2P19823 946 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 RPL13P26373 211 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 GSTT1P30711 240 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 KPNB1Q14974 876 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 NLRP9Q7RTR0 991 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 OTOAQ7RTW8 1153 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 CLNKQ7Z7G1 428 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SLC51AQ86UW1 340 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 TRABD2AQ86V40 505 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 KIAA0825Q8IV33 1275 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 PTPRN2Q92932 1015 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 DDX50Q9BQ39 737 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 WNT8AQ9H1J5 351 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 JMJD4Q9H9V9 463 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 G3BP2Q9UN86 482 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 RPS6KL1Q9Y6S9 549 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 TAF1LQ8IZX4 1826 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 WNK3Q9BYP7 1800 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SFI1A8K8P3 1242 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 CAPN9O14815 690 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 EXOC3O60645 756 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 UBTFL6P0CB48 400 aaPredicted RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 SKIP12755 728 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 NOVP48745 357 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 VPS41P49754 854 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 NEK3P51956 506 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 GPC5P78333 572 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 CDR2Q01850 454 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 PTK6Q13882 451 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SLC1A5Q15758 541 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 CCDC6Q16204 474 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 PDK4Q16654 411 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 PABPC1LQ4VXU2 614 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 SGO2Q562F6 1265 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 C16orf86Q6ZW13 317 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 MTDHQ86UE4 582 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 CLEC10AQ8IUN9 316 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 LRRC47Q8N1G4 583 aaKnown RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 ANKRD35Q8N283 1001 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 SYT2Q8N9I0 419 aaPredicted RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 LMO3Q8TAP4 145 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 DTX3LQ8TDB6 740 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 WDR60Q8WVS4 1066 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 TMX4Q9H1E5 349 aaPredicted RBP7.24□□□□□ -1.25
VPS39-202ENST00000348544 GPCPD1Q9NPB8 672 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 ARL8BQ9NVJ2 186 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 ZFP69BQ9UJL9 534 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 WASF2Q9Y6W5 498 aa7.24□□□□□ -1.25
VPS39-202ENST00000348544 MAGEA13PA6NCF6 341 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 FSCN2O14926 492 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SORBS3O60504 671 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 MTA2O94776 668 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 PSMG1O95456 288 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SPATA31D3P0C874 917 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 RRM1P23921 792 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 RPA3P35244 121 aaPredicted RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 PSMC2P35998 433 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 PSMC4P43686 418 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 CRKLP46109 303 aaKnown RBP7.23□□□□□ -1.25
VPS39-202ENST00000348544 RASSF2P50749 326 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 SLC34A1Q06495 639 aa7.23□□□□□ -1.25
VPS39-202ENST00000348544 DYNC1I2Q13409 638 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms