RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RNF149Q8NC42 400 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TRAPPC12Q8WVT3 735 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 CCDC127Q96BQ5 260 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 MMS19Q96T76 1030 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 C16orf70Q9BSU1 422 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TARS2Q9BW92 718 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 MRPL4Q9BYD3 311 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 TMEM117Q9H0C3 514 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TUT1Q9H6E5 874 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 TMEM8AQ9HCN3 771 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 GOLGA6AQ9NYA3 693 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 LCMT1Q9UIC8 334 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 A0A0B4J269 797 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 TRIM66O15016 1216 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 C22orf31O95567 290 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 MAPK6Q16659 721 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 OLFML2BQ68BL8 750 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 GJB7Q6PEY0 223 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
CLK3-201ENST00000345005 VPS36Q86VN1 386 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 RHPN2Q8IUC4 686 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 SOCS4Q8WXH5 440 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 SELENOOQ9BVL4 669 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 CCDC113Q9H0I3 377 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 COQ4Q9Y3A0 265 aa13.82□□□□□ -0.2
CLK3-201ENST00000345005 ATXN2Q99700 1313 aaKnown RBP13.82□□□□□ -0.2
CLK3-201ENST00000345005 CLDN3O15551 220 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 MSCO60682 206 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 PHACTR2O75167 634 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 ABL1P00519 1130 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 PRKCBP05771 671 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 MMP3P08254 477 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 ZNF286BP0CG31 522 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 KLRC1P26715 233 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 TMOD1P28289 359 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 SOX5P35711 763 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 PAFAH1B1P43034 410 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 EPHB4P54760 987 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 IGBP1P78318 339 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 MAP2K1Q02750 393 aaPredicted RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 POU5F1BQ06416 359 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 DRAP1Q14919 205 aaPredicted RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 PSMD6Q15008 389 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 SLC18A3Q16572 532 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 C10orf76Q5T2E6 689 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 SWT1Q5T5J6 900 aaKnown RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 B4GALNT4Q76KP1 1039 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 SUGP1Q8IWZ8 645 aaKnown RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 AENQ8WTP8 325 aaKnown RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 ZBTB45Q96K62 511 aaPredicted RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 MSTO1Q9BUK6 570 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 AJAP1Q9UKB5 411 aaPredicted RBP13.81□□□□□ -0.2
CLK3-201ENST00000345005 SNX12Q9UMY4 172 aa13.81□□□□□ -0.2
CLK3-201ENST00000345005 RCCD1A6NED2 376 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 TMEM88BA6NKF7 163 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 F8VZ95 297 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 TNPO2O14787 897 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 PJA2O43164 708 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 CA12O43570 354 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 TOM1L1O75674 476 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GFPT2O94808 682 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GPC3P51654 580 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 CLDN10P78369 228 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GFPT1Q06210 699 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 CRHR2Q13324 411 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 ENOX2Q16206 610 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 PHLDB3Q6NSJ2 640 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GPIHBP1Q8IV16 184 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 RNF10Q8N5U6 811 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 FBXL13Q8NEE6 735 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 FNBP1Q96RU3 617 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 RUFY1Q96T51 708 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 POP1Q99575 1024 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 ACO2Q99798 780 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLK3-201ENST00000345005 NFKBIZQ9BYH8 718 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 LACRTQ9GZZ8 138 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 TRIM10Q9UDY6 481 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GJD2Q9UKL4 321 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 A6NJR5 290 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 DYNC1LI2O43237 492 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 ECM2O94769 699 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 DLATP10515 647 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 CYP2B6P20813 491 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GGCXP38435 758 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 CLCN3P51790 818 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 NLRP11P59045 1033 aaKnown RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 PTENP60484 403 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 PTK2Q05397 1052 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 PRAMEF19Q5SWL8 479 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 CRELD2Q6UXH1 353 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 ZNF571Q7Z3V5 609 aaPredicted RBP13.8□□□□□ -0.2
CLK3-201ENST00000345005 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLK3-201ENST00000345005 APBA2Q99767 749 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 HAPLN2Q9GZV7 340 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 FZD8Q9H461 694 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 FLRT1Q9NZU1 646 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 ANKFY1Q9P2R3 1169 aa13.8□□□□□ -0.2
CLK3-201ENST00000345005 GNEQ9Y223 722 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms