RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ZNF287Q9HBT7 754 aa3.76□□□□□ -1.81
SYNE1-201ENST00000341594 MYO1EQ12965 1108 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SLC12A7Q9Y666 1083 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PFKFB2O60825 505 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PGRP06401 933 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 Q3C1V9 767 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ELF4Q99607 663 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DSCC1Q9BVC3 393 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 HOMER2Q9NSB8 354 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CARD8Q9Y2G2 431 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PPP2R2CQ9Y2T4 447 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ALPK2Q86TB3 2170 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NLRC5Q86WI3 1866 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PALM3A6NDB9 673 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TECP42680 631 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CDR2Q01850 454 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TCEA2Q15560 299 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CEP78Q5JTW2 689 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PM20D2Q8IYS1 436 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CEP295NLQ96MC4 621 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 COPS4Q9BT78 406 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SACM1LQ9NTJ5 587 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MTRF1LQ9UGC7 380 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SCOCQ9UIL1 159 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ICE1Q9Y2F5 2266 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GJB6O95452 261 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ANTXR2P58335 489 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CES3Q6UWW8 571 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 FAM89AQ96GI7 184 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MEGF6O75095 1541 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TARSP26639 723 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TRPC3Q13507 836 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 METTL22Q9BUU2 404 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF236Q9UL36 1845 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CYP2J2P51589 502 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SUZ12Q15022 739 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SHQ1Q6PI26 577 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RHPN1Q8TCX5 695 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PAPOLBQ9NRJ5 636 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MCM8Q9UJA3 840 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TCEA3O75764 348 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 KLC1Q07866 573 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MED1Q15648 1581 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PLA2G4EQ3MJ16 856 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CCDC62Q6P9F0 684 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NOA1Q8NC60 698 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PLXNA1Q9UIW2 1896 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 UBR1Q8IWV7 1749 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ITGB3BPQ13352 177 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 LAMB3Q13751 1172 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PARP10Q53GL7 1025 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TTC6Q86TZ1 520 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RIBC1Q8N443 379 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SPATA6LQ8N4H0 392 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 TMCC3Q9ULS5 477 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 A0A1B0GW55 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L2P0CJ85 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L3P0CJ86 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L4P0CJ87 422 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L5P0CJ88 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L6P0CJ89 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4L7P0CJ90 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 HK2P52789 917 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RNF25Q96BH1 459 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DUX4Q9UBX2 424 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SPTLC2O15270 562 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 BCAS4Q8TDM0 211 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 KIFAP3Q92845 792 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 GPKOWQ92917 476 aaPredicted RBP eCLIP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ING3Q9NXR8 418 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MAP3K6O95382 1288 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 POSTNQ15063 836 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 LDLRAP1Q5SW96 308 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NFRKBQ6P4R8 1299 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 KIAA2013Q8IYS2 634 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DGCR14Q96DF8 476 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 YTHDF1Q9BYJ9 559 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 AASDHPPTQ9NRN7 309 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 ZNF446Q9NWS9 450 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SEL1LQ9UBV2 794 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 LRRIQ3A6PVS8 624 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 F8W8V4 182 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 KCNK3O14649 394 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PRICKLE3O43900 615 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DCTN3O75935 186 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CYLC2Q14093 348 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 IQCKQ8N0W5 287 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 NDEL1Q9GZM8 345 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 FAM204AQ9H8W3 233 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 MYCLP12524 364 aaPredicted RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 DAB2IPQ5VWQ8 1189 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 INTS8Q75QN2 995 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 CAPSLQ8WWF8 208 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 OSBPL2Q9H1P3 480 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 PTBP2Q9UKA9 531 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 RTCBQ9Y3I0 505 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 EYA4O95677 639 aa3.75□□□□□ -1.81
SYNE1-201ENST00000341594 S100A9P06702 114 aaKnown RBP3.75□□□□□ -1.81
SYNE1-201ENST00000341594 SPARCL1Q14515 664 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms