RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 CACNG4Q9UBN1 327 aa16.65■□□□□ 0.26
UBE3B-201ENST00000340074 OGTO15294 1046 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 IRS1P35568 1242 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 ERVFC1P60507 584 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 FAM160A1Q05DH4 1040 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 NAB2Q15742 525 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 SLC10A6Q3KNW5 377 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 KMT5BQ4FZB7 885 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 XKR4Q5GH76 650 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 ZBTB41Q5SVQ8 909 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 SLFN12LQ6IEE8 588 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 EPM2AIP1Q7L775 607 aaPredicted RBP16.64■□□□□ 0.25
UBE3B-201ENST00000340074 PPP1R10Q96QC0 940 aaKnown RBP16.64■□□□□ 0.25
UBE3B-201ENST00000340074 TMEM206Q9H813 350 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 SLC39A2Q9NP94 309 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 TLR9Q9NR96 1032 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 PUF60Q9UHX1 559 aaKnown RBP16.64■□□□□ 0.25
UBE3B-201ENST00000340074 LZTS1Q9Y250 596 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 PRG3Q9Y2Y8 225 aaPredicted RBP16.64■□□□□ 0.25
UBE3B-201ENST00000340074 PCDHGC5Q9Y5F6 944 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 STYXL1Q9Y6J8 313 aa16.64■□□□□ 0.25
UBE3B-201ENST00000340074 BRWD1Q9NSI6 2320 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 SMIM28A0A1B0GU29 152 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 CASTOR2A6NHX0 329 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 F8W810 466 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 EIF3DO15371 548 aaKnown RBP eCLIP16.63■□□□□ 0.25
UBE3B-201ENST00000340074 CLTAP09496 248 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 CXCL8P10145 99 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 ADSSP30520 456 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 HOXD13P35453 343 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 DPYDQ12882 1025 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 TUSC3Q13454 348 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 TIGD5Q53EQ6 642 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 TMEM87AQ8NBN3 555 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 ZNF507Q8TCN5 953 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 MICAL1Q8TDZ2 1067 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 POMGNT1Q8WZA1 660 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 RABGGTAQ92696 567 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 ZMAT2Q96NC0 199 aaKnown RBP16.63■□□□□ 0.25
UBE3B-201ENST00000340074 PAAF1Q9BRP4 392 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 NSUN3Q9H649 340 aaKnown RBP16.63■□□□□ 0.25
UBE3B-201ENST00000340074 EXOC1Q9NV70 894 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 MARCH5Q9NX47 278 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 AGO2Q9UKV8 859 aaKnown RBP16.63■□□□□ 0.25
UBE3B-201ENST00000340074 SPTBN5Q9NRC6 3674 aaKnown RBP16.63■□□□□ 0.25
UBE3B-201ENST00000340074 VWA8A3KMH1 1905 aa16.63■□□□□ 0.25
UBE3B-201ENST00000340074 NR1I2O75469 434 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 RPN1P04843 607 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 ACOT2P49753 483 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 POSTNQ15063 836 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 ENOX2Q16206 610 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 KYAT1Q16773 422 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 TCEAL5Q5H9L2 206 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 KANK3Q6NY19 840 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 DDX53Q86TM3 631 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 SCFD1Q8WVM8 642 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 TCF25Q9BQ70 676 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 VN1R3Q9BXE9 311 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 ENTPD7Q9NQZ7 604 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 CNTN3Q9P232 1028 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 CPSF3Q9UKF6 684 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 TTC26A0AVF1 554 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 FSCN2O14926 492 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 KCNE1P15382 129 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 STK4Q13043 487 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 PSMD2Q13200 908 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 SKIV2LQ15477 1246 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 PLPP4Q5VZY2 271 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 ADGRD2Q7Z7M1 963 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 NELFCDQ8IXH7 590 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 VPS52Q8N1B4 723 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 KIAA0895Q8NCT3 520 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 CCDC34Q96HJ3 373 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 COLEC11Q9BWP8 271 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 RPF1Q9H9Y2 349 aaKnown RBP16.62■□□□□ 0.25
UBE3B-201ENST00000340074 PLEKHA5Q9HAU0 1116 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 GOLGA2P5Q9HBQ8 144 aa16.62■□□□□ 0.25
UBE3B-201ENST00000340074 UBE4BO95155 1302 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 LACTBL1A8MY62 500 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 PPP2R3AQ06190 1150 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 SOX4Q06945 474 aaPredicted RBP16.61■□□□□ 0.25
UBE3B-201ENST00000340074 SPAG1Q07617 926 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 PNOCQ13519 176 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 HSP90AA2PQ14568 343 aaPredicted RBP16.61■□□□□ 0.25
UBE3B-201ENST00000340074 PDE12Q6L8Q7 609 aaKnown RBP16.61■□□□□ 0.25
UBE3B-201ENST00000340074 TMC7Q7Z402 723 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 ZSWIM2Q8NEG5 633 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 C18orf25Q96B23 403 aaPredicted RBP16.61■□□□□ 0.25
UBE3B-201ENST00000340074 TIGD1Q96MW7 591 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 CBWD1Q9BRT8 395 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 PRDM6Q9NQX0 595 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 SLC38A7Q9NVC3 462 aa16.61■□□□□ 0.25
UBE3B-201ENST00000340074 GARTP22102 1010 aa16.6■□□□□ 0.25
UBE3B-201ENST00000340074 GTF2F1P35269 517 aaKnown RBP eCLIP16.6■□□□□ 0.25
UBE3B-201ENST00000340074 CLCNKBP51801 687 aa16.6■□□□□ 0.25
UBE3B-201ENST00000340074 BMT2Q1RMZ1 405 aa16.6■□□□□ 0.25
UBE3B-201ENST00000340074 ARMCX5Q6P1M9 558 aa16.6■□□□□ 0.25
UBE3B-201ENST00000340074 CRELD2Q6UXH1 353 aaPredicted RBP16.6■□□□□ 0.25
UBE3B-201ENST00000340074 HASPINQ8TF76 798 aa16.6■□□□□ 0.25
UBE3B-201ENST00000340074 CCDC47Q96A33 483 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms