RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 KIF11P52732 1056 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CLDN10P78369 228 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CDK17Q00537 523 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 PTK2Q05397 1052 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 GFPT1Q06210 699 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 POU5F1BQ06416 359 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 DRAP1Q14919 205 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 ASIC2Q16515 512 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ASTE1Q2TB18 679 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 NBPF20Q3BBV1 942 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 TDRD12Q587J7 1177 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 MAP3K21Q5TCX8 1036 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 TDRD10Q5VZ19 366 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 KRT39Q6A163 491 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 C15orf39Q6ZRI6 1047 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 IRF2BP2Q7Z5L9 587 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 BRSK2Q8IWQ3 736 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 WNT8BQ93098 351 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CCDC42Q96M95 316 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FNBP1Q96RU3 617 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 MTG1Q9BT17 334 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 HAUS4Q9H6D7 363 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 KIAA1586Q9HCI6 787 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 AIPL1Q9NZN9 384 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CPSF3Q9UKF6 684 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 THSD7BQ9C0I4 1608 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 SCN10AQ9Y5Y9 1956 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 GRIN2DO15399 1336 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 EIF3CLB5ME19 914 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 FOXN3O00409 490 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 KIAA0391O15091 583 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 PMM2O15305 246 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 P4HA2O15460 535 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 AKR1B10O60218 316 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FKTNO75072 461 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ERLIN2O94905 339 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 VNN1O95497 513 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 LDHAP00338 332 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 C4BPAP04003 597 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 SERPING1P05155 500 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ASGR1P07306 291 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CXCL8P10145 99 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 KLHL30Q0D2K2 578 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 BIRC3Q13489 604 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 KCNA10Q16322 511 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FAM187BQ17R55 369 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ZACNQ401N2 412 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 SLC9C1Q4G0N8 1177 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FAM47CQ5HY64 1035 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 SPOPLQ6IQ16 392 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CCSAPQ6IQ19 270 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 GDF6Q6KF10 455 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 SYT10Q6XYQ8 523 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 ZNF571Q7Z3V5 609 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 ZNF410Q86VK4 478 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 DNAAF5Q86Y56 855 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 CCDC170Q8IYT3 715 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FBXL13Q8NEE6 735 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 OLIG1Q8TAK6 271 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 DHX38Q92620 1227 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 SYN2Q92777 582 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 TATDN2Q93075 761 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 KREMEN1Q96MU8 473 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 WDR24Q96S15 920 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 EIF3CQ99613 913 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 CGRRF1Q99675 332 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 ARID3AQ99856 593 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 KATNAL1Q9BW62 490 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 STK33Q9BYT3 514 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 LACRTQ9GZZ8 138 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 UBE2TQ9NPD8 197 aaPredicted RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 RAB20Q9NX57 234 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 FBXL5Q9UKA1 691 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 COQ4Q9Y3A0 265 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 R3HCC1Q9Y3T6 440 aaKnown RBP4.48□□□□□ -1.69
MCF2-201ENST00000338585 DUSP10Q9Y6W6 482 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 BRCA2P51587 3418 aa4.48□□□□□ -1.69
MCF2-201ENST00000338585 UMODL1Q5DID0 1318 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 A0A087X0T9 212 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 EVI5O60447 810 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 MYCP01106 439 aaPredicted RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 CALCAP01258 141 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 HLA-DRAP01903 254 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 INHAP05111 366 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 FAM228BP0C875 321 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 DARSP14868 501 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 HOXD10P28358 340 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 HOXA11P31270 313 aaPredicted RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 GTF2H1P32780 548 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CYLC1P35663 651 aaPredicted RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 SOX5P35711 763 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 NKX3-2P78367 333 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CETN1Q12798 172 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 SRGAP1Q7Z6B7 1085 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 EFCAB13Q8IY85 973 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PPM1KQ8N3J5 372 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 KLHDC9Q8NEP7 349 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 HELQQ8TDG4 1101 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms