RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TNFSF9P41273 254 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CDK7P50613 346 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 POLR2FP61218 127 aaKnown RBP16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 TMEM132AQ24JP5 1023 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CYP26C1Q6V0L0 522 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CACNA2D4Q7Z3S7 1137 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM228AQ86W67 206 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 NT5DC4Q86YG4 428 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CD302Q8IX05 232 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF516Q92618 1163 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 CPB2Q96IY4 423 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 ZNF333Q96JL9 665 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 FAM81BQ96LP2 452 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 STARD7Q9NQZ5 370 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 TOPORSQ9NS56 1045 aaPredicted RBP16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 AIPL1Q9NZN9 384 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 PTPRJQ12913 1337 aa16.15■□□□□ 0.18
CCDC88C-202ENST00000334448 LRRC53A6NM62 1247 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 CHRNA1P02708 482 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 HARSP12081 509 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 ACTN1P12814 892 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 MSNP26038 577 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 ANXA13P27216 316 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 MTFR1Q15390 333 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 TSR1Q2NL82 804 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 TDRD10Q5VZ19 366 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 CEP120Q8N960 986 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 USP38Q8NB14 1042 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 TAS1R2Q8TE23 839 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 TSPAN18Q96SJ8 248 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 TRAIPQ9BWF2 469 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 STK33Q9BYT3 514 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 RPF1Q9H9Y2 349 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 PLEKHA5Q9HAU0 1116 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 CHST12Q9NRB3 414 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 SPTLC3Q9NUV7 552 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 ZNHIT6Q9NWK9 470 aaKnown RBP16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 RAB20Q9NX57 234 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 GINS2Q9Y248 185 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 FHOD1Q9Y613 1164 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 MROH7Q68CQ1 1323 aa16.14■□□□□ 0.17
CCDC88C-202ENST00000334448 MEFVO15553 781 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 MYCNP04198 464 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 FGFR4P22455 802 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 PRKCIP41743 596 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 DUOXA2Q1HG44 320 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 UBXN11Q5T124 520 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 E4F1Q66K89 784 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 IQCEQ6IPM2 695 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 RRAGAQ7L523 313 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 ENOSF1Q7L5Y1 443 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 THNSL1Q8IYQ7 743 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 CCDC170Q8IYT3 715 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 SEMA4DQ92854 862 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 DEFB118Q96PH6 123 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 POP1Q99575 1024 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 TRMT13Q9NUP7 481 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 DERAQ9Y315 318 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 NOC2LQ9Y3T9 749 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 C2CD2Q9Y426 696 aa16.13■□□□□ 0.17
CCDC88C-202ENST00000334448 SSU72P8A0A1W2PR75 194 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 VNN1O95497 513 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 CXCL8P10145 99 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 TNNI1P19237 187 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 APBA1Q02410 837 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 GCNT1Q02742 428 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 SLC10A6Q3KNW5 377 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 SEZ6Q53EL9 994 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 FBXO47Q5MNV8 452 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 HGSNATQ68CP4 663 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 PHLDB3Q6NSJ2 640 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 TRAF7Q6Q0C0 670 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 CDR2LQ86X02 465 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 TMEM192Q8IY95 271 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 OR5B17Q8NGF7 314 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 CAGE1Q8TC20 777 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 JAKMIP2Q96AA8 810 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 FAXDC2Q96IV6 333 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 CCDC94Q9BW85 323 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 RNF208Q9H0X6 261 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 ERVK-5Q9HDB9 667 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 PIN4Q9Y237 131 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 NOD1Q9Y239 953 aa16.12■□□□□ 0.17
CCDC88C-202ENST00000334448 TRIP12Q14669 1992 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 CEP350Q5VT06 3117 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 F8VZ95 297 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 GPR182O15218 404 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 RPS6KA5O75582 802 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 HLA-DRAP01903 254 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 THPOP40225 353 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 CTCFP49711 727 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 MNX1P50219 401 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 XKR4Q5GH76 650 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 C1orf53Q5VUE5 145 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 SFMBT2Q5VUG0 894 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 RAD9BQ6WBX8 426 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 FAM126BQ8IXS8 530 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 EFCAB13Q8IY85 973 aa16.11■□□□□ 0.17
CCDC88C-202ENST00000334448 HELQQ8TDG4 1101 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms