RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KRT85P78386 507 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 MAP4K3Q8IVH8 894 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 IQUBQ8NA54 791 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 BICD1Q96G01 975 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 MSLNLQ96KJ4 702 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 SPATA32Q96LK8 384 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 ZMAT2Q96NC0 199 aaKnown RBP17.31■□□□□ 0.36
CLN3-201ENST00000333496 ACAP3Q96P50 834 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 CDCA3Q99618 268 aaPredicted RBP17.31■□□□□ 0.36
CLN3-201ENST00000333496 CUEDC2Q9H467 287 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 TBC1D7Q9P0N9 293 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 SEL1LQ9UBV2 794 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 SMIM28A0A1B0GU29 152 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 HNRNPDLO14979 420 aaKnown RBP17.3■□□□□ 0.36
CLN3-201ENST00000333496 FAM189A1O60320 539 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 LILRB3O75022 631 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 SOD2P04179 222 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 IDEP14735 1019 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 GAP43P17677 238 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 LIG4P49917 911 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 PTPN14Q15678 1187 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 SLC10A6Q3KNW5 377 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 ADAMTS19Q8TE59 1207 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 SNX27Q96L92 541 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 COLEC11Q9BWP8 271 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 FGFBP2Q9BYJ0 223 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 GPR62Q9BZJ7 368 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 IKZF4Q9H2S9 585 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 OLFML3Q9NRN5 406 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 PANK4Q9NVE7 773 aa17.3■□□□□ 0.36
CLN3-201ENST00000333496 BARX2Q9UMQ3 279 aaPredicted RBP17.3■□□□□ 0.36
CLN3-201ENST00000333496 MTCL1Q9Y4B5 1905 aaKnown RBP17.3■□□□□ 0.36
CLN3-201ENST00000333496 TISP43B9A030 160 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ANKRD63C9JTQ0 380 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 NR1I2O75469 434 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 IGFBP6P24592 240 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 NDUFV1P49821 464 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 CASP5P51878 434 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 YARSP54577 528 aaKnown RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 SOX4Q06945 474 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 KCNA1Q09470 495 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 HSP90AA2PQ14568 343 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 CLUL1Q15846 466 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ADALQ6DHV7 355 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 TRIM9Q9C026 710 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 MRPL44Q9H9J2 332 aaKnown RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 TOPORSQ9NS56 1045 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 FAM13BQ9NYF5 915 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ADAM28Q9UKQ2 775 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 GRXCR2A6NFK2 248 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 CLASP2O75122 1294 aaKnown RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 IL9P15248 144 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ABCD1P33897 745 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 CA8P35219 290 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 TNFSF9P41273 254 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 MATR3P43243 847 aaKnown RBP eCLIP17.29■□□□□ 0.36
CLN3-201ENST00000333496 HERC4Q5GLZ8 1057 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 ZBTB41Q5SVQ8 909 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 PTCRAQ6ISU1 281 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 FUT10Q6P4F1 479 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 TMEM184AQ6ZMB5 413 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 HASPINQ8TF76 798 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 NECAB3Q96P71 396 aaPredicted RBP17.29■□□□□ 0.36
CLN3-201ENST00000333496 HERC2P3Q9BVR0 1158 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 GOLGA2P5Q9HBQ8 144 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 CNTN3Q9P232 1028 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 STK39Q9UEW8 545 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 KCNH3Q9ULD8 1083 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 ATP6V1DQ9Y5K8 247 aa17.29■□□□□ 0.36
CLN3-201ENST00000333496 A0A0B4J269 797 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 KIF4AO95239 1232 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 MYBP10242 640 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 KCNE1P15382 129 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 COASYQ13057 564 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 BMS1Q14692 1282 aaKnown RBP17.28■□□□□ 0.36
CLN3-201ENST00000333496 KIAA0319Q5VV43 1072 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 CNNM4Q6P4Q7 775 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 HVCN1Q96D96 273 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 B3GALT6Q96L58 329 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 CHST7Q9NS84 486 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 HCFC2Q9Y5Z7 792 aa17.28■□□□□ 0.36
CLN3-201ENST00000333496 A0A1B0GVL5 298 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 FSD2A1L4K1 749 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 MBTPS2O43462 519 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CXCL8P10145 99 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CMA1P23946 247 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CASP1P29466 404 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CLCNKBP51801 687 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 LLGL2Q6P1M3 1020 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CD300LGQ6UXG3 332 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CCDC65Q8IXS2 484 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 HPS3Q969F9 1004 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 C7orf25Q9BPX7 421 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 LRRC27Q9C0I9 530 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 GDPD2Q9HCC8 539 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 CD207Q9UJ71 328 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 STYXL1Q9Y6J8 313 aa17.27■□□□□ 0.36
CLN3-201ENST00000333496 NCOR1O75376 2440 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 TTC26A0AVF1 554 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms