RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DSC1Q08554 894 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 ARMCX5Q6P1M9 558 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 COLGALT2Q8IYK4 626 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 SLC39A11Q8N1S5 342 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 NOC3LQ8WTT2 800 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 SMARCE1Q969G3 411 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 CBWD1Q9BRT8 395 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 TMEM175Q9BSA9 504 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 PCIF1Q9H4Z3 704 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 RPF1Q9H9Y2 349 aaKnown RBP17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 LMBRD1Q9NUN5 540 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 RMND1Q9NWS8 449 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 PRG3Q9Y2Y8 225 aaPredicted RBP17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 PLXNA4Q9HCM2 1894 aa17.32■□□□□ 0.36
CCDC28A-201ENST00000332797 SMIM28A0A1B0GU29 152 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CARNS1A5YM72 827 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 GOLGA6L22H0YM25 854 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 MEFVO15553 781 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 PPP2R3AQ06190 1150 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 TUSC3Q13454 348 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ENOX2Q16206 610 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 SLC10A6Q3KNW5 377 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ALKAL1Q6UXT8 129 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 TMEM173Q86WV6 379 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ELOA2Q8IYF1 753 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 MICALL1Q8N3F8 863 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 SPPL3Q8TCT6 385 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 FAM212AQ96EL1 285 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 SAAL1Q96ER3 474 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 PPP1R10Q96QC0 940 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CNTN3Q9P232 1028 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CPSF3Q9UKF6 684 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 FAN1Q9Y2M0 1017 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 PCDHA5Q9Y5H7 936 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CITO14578 2027 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CASTOR2A6NHX0 329 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 NRP1O14786 923 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 TGFB1I1O43294 461 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ALDH2P05091 517 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 PTPROQ16827 1216 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 KNOP1Q1ED39 458 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 XKR4Q5GH76 650 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 HS2ST1Q7LGA3 356 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ZSWIM2Q8NEG5 633 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 BCL7CQ8WUZ0 217 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 POF1BQ8WVV4 589 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 MRPL38Q96DV4 380 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 TMEM169Q96HH4 297 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 ZMAT2Q96NC0 199 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 GSDMAQ96QA5 445 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 FAM213AQ9BRX8 229 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 AGPAT3Q9NRZ7 376 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 CACNG4Q9UBN1 327 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 MTCH2Q9Y6C9 303 aa17.31■□□□□ 0.36
CCDC28A-201ENST00000332797 GOLGA8IPA6NC78 632 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 GOLGA8JA6NMD2 632 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 KCNE1P15382 129 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 DNAJB1P25685 340 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 PLCB3Q01970 1234 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 KRT17Q04695 432 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 SPAG1Q07617 926 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 NAB2Q15742 525 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 RABGGTAQ92696 567 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 IGSF21Q96ID5 467 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 LMAN2LQ9H0V9 348 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 PLEKHA5Q9HAU0 1116 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 MAPK8IP1Q9UQF2 711 aa17.3■□□□□ 0.36
CCDC28A-201ENST00000332797 MYO9BQ13459 2157 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 TTC26A0AVF1 554 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 LACTBL1A8MY62 500 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 F8W810 466 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 TULP1O00294 542 aaPredicted RBP17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 CLIC2O15247 247 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 EXTL3O43909 919 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 KIF20AO95235 890 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 LDHAP00338 332 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 CYP2J2P51589 502 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 UBE3AQ05086 875 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 CAMK4Q16566 473 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 CRELD2Q6UXH1 353 aaPredicted RBP17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 SMYD4Q8IYR2 804 aaPredicted RBP17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 SPATA20Q8TB22 786 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 PAAF1Q9BRP4 392 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 GOLGA2P5Q9HBQ8 144 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 SLC38A7Q9NVC3 462 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 HSPBP1Q9NZL4 362 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 LMCD1Q9NZU5 365 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 PUF60Q9UHX1 559 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 STXBP5LQ9Y2K9 1186 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 TRIP11Q15643 1979 aa17.29■□□□□ 0.36
CCDC28A-201ENST00000332797 PDCD11Q14690 1871 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 KIAA0391O15091 583 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 POU3F3P20264 500 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 SNRPFP62306 86 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 SOX4Q06945 474 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 HSP90AA2PQ14568 343 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 GPD1LQ8N335 351 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 GOLGA5Q8TBA6 731 aa17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 C18orf25Q96B23 403 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-201ENST00000332797 KIF12Q96FN5 646 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms