RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 MAGEB2O15479 319 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 B4GALT5O43286 388 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 MMP3P08254 477 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 TMEM253P0C7T8 217 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 TCP1P17987 556 aaKnown RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 CXCR5P32302 372 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 NOP2P46087 812 aaKnown RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 CLCN6P51797 869 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 GCNT1Q02742 428 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 MAP2K5Q13163 448 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 TAF1CQ15572 869 aaPredicted RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 RGMBQ6NW40 437 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 BRSK2Q8IWQ3 736 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 OR6J1Q8NGC5 347 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 PSMB7Q99436 277 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 PDCL3Q9H2J4 239 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 TUT1Q9H6E5 874 aaKnown RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 ZCCHC17Q9NP64 241 aaKnown RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 SEPT11Q9NVA2 429 aaKnown RBP18.28■□□□□ 0.52
DDX41-201ENST00000330503 ZNF446Q9NWS9 450 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 FLRT1Q9NZU1 646 aa18.28■□□□□ 0.52
DDX41-201ENST00000330503 COL1A2P08123 1366 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 OGTO15294 1046 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 CKAP4Q07065 602 aaKnown RBP18.27■□□□□ 0.52
DDX41-201ENST00000330503 EEF1DP3Q658K8 133 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 C17orf99Q6UX52 265 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 MSANTD4Q8NCY6 345 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 NFKBIZQ9BYH8 718 aa18.27■□□□□ 0.52
DDX41-201ENST00000330503 NCANO14594 1321 aa18.27■□□□□ 0.51
DDX41-201ENST00000330503 FAM170AA1A519 330 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 INO80B-WBP1J3KQ70 363 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 TNFAIP2Q03169 654 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 POU5F1BQ06416 359 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 MARCH8Q5T0T0 291 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 TAF3Q5VWG9 929 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 MTHFD1LQ6UB35 978 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 ENOSF1Q7L5Y1 443 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 USP6NLQ92738 828 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 ARHGEF26Q96DR7 871 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 INO80BQ9C086 356 aaPredicted RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 ISCUQ9H1K1 167 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 APOBEC3GQ9HC16 384 aaKnown RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 SLC5A4Q9NY91 659 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 TSKSQ9UJT2 592 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 CPSF3Q9UKF6 684 aaKnown RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 RRP9O43818 475 aaKnown RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 PIK3CAP42336 1068 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 FMO1Q01740 532 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 BIRC3Q13489 604 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 IFI16Q16666 785 aaKnown RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 ATF7IP2Q5U623 682 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 SPOPLQ6IQ16 392 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 MPZL3Q6UWV2 235 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 ZNF572Q7Z3I7 529 aaPredicted RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 SLFN11Q7Z7L1 901 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 DDX1Q92499 740 aaKnown RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 PNKPQ96T60 521 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 ARID3AQ99856 593 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 GOLPH3Q9H4A6 298 aa18.26■□□□□ 0.51
DDX41-201ENST00000330503 PACSIN2Q9UNF0 486 aaPredicted RBP18.26■□□□□ 0.51
DDX41-201ENST00000330503 ANKRD62A6NC57 917 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 FTLP02792 175 aaPredicted RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 HOXC6P09630 235 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 RHOXF2BP0C7M4 288 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 CYP11B1P15538 503 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 ABCB4P21439 1286 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 GRM1Q13255 1194 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 WDR44Q5JSH3 913 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 CDR2LQ86X02 465 aaPredicted RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 IFNL1Q8IU54 200 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 SLC35G2Q8TBE7 412 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 RHOXF2Q9BQY4 288 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 THAP2Q9H0W7 228 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 SMARCAL1Q9NZC9 954 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 EHD2Q9NZN4 543 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 A0A087WZ62 844 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 CSDE1O75534 798 aaKnown RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 CALCAP01258 141 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 MMEP08473 750 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 AMHR2Q16671 573 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 DGKDQ16760 1214 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 IFNLR1Q8IU57 520 aaPredicted RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 CAGE1Q8TC20 777 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 RPGRIP1Q96KN7 1286 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 FDXACB1Q9BRP7 624 aaPredicted RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 OSGEPQ9NPF4 335 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 C1orf112Q9NSG2 853 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 GNEQ9Y223 722 aaKnown RBP18.25■□□□□ 0.51
DDX41-201ENST00000330503 STXBP5LQ9Y2K9 1186 aa18.25■□□□□ 0.51
DDX41-201ENST00000330503 DYNC1LI2O43237 492 aaPredicted RBP18.24■□□□□ 0.51
DDX41-201ENST00000330503 RTN2O75298 545 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 SLC10A3P09131 477 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 ZNF865P0CJ78 1059 aaPredicted RBP18.24■□□□□ 0.51
DDX41-201ENST00000330503 GRIK4Q16099 956 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 CCL14Q16627 93 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 FAM187BQ17R55 369 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 CTNNBL1Q8WYA6 563 aaPredicted RBP18.24■□□□□ 0.51
DDX41-201ENST00000330503 RFFLQ8WZ73 363 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 FAM81BQ96LP2 452 aa18.24■□□□□ 0.51
DDX41-201ENST00000330503 PPP1R16BQ96T49 567 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms