RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 TMEM39BQ9GZU3 492 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 XYLT2Q9H1B5 865 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 R3HDMLQ9H3Y0 253 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 EPB41L5Q9HCM4 733 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 ZNF214Q9UL59 606 aaPredicted RBP8.46□□□□□ -1.06
CNOT4-201ENST00000315544 ANKRD62A6NC57 917 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 DSG3P32926 999 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 BTKQ06187 659 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 ADAM9Q13443 819 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 MNS1Q8NEH6 495 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 C18orf8Q96DM3 657 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 MXRA8Q9BRK3 442 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 PI4KBQ9UBF8 816 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 AGTPBP1Q9UPW5 1226 aa8.46□□□□□ -1.06
CNOT4-201ENST00000315544 MAFBQ9Y5Q3 323 aaPredicted RBP8.46□□□□□ -1.06
CNOT4-201ENST00000315544 RBM47A0AV96 593 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 CCDC66A2RUB6 948 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ASMTLO95671 621 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 TCF4P15884 667 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 NR2F2P24468 414 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 MCM3P25205 808 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 WDR4P57081 412 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 CACNB1Q02641 598 aaPredicted RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 SLC25A11Q02978 314 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 SNX17Q15036 470 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 DLGAP5Q15398 846 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 DZIP1Q86YF9 867 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ABRAQ8N0Z2 381 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ENDOVQ8N8Q3 282 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 SPIRE2Q8WWL2 714 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 INTS2Q9H0H0 1204 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 UBN1Q9NPG3 1134 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 R3HDM2Q9Y2K5 976 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ZHX2Q9Y6X8 837 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 SYNGAP1Q96PV0 1343 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 A6NHS1 94 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ICAM1P05362 532 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 INPP5BP32019 993 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 FOXN2P32314 431 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 GTF2H1P32780 548 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 MAN1A1P33908 653 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ABL2P42684 1182 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 MAGEA1P43355 309 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 IFI35P80217 286 aaPredicted RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 AMPD3Q01432 767 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 KIF5AQ12840 1032 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ITIH4Q14624 930 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 GLT8D2Q9H1C3 349 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ACP6Q9NPH0 428 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 CLUHO75153 1309 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 HOXD8P13378 290 aaPredicted RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 GABRB2P47870 512 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 PDCLQ13371 301 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 DHX34Q14147 1143 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 CFAP221Q4G0U5 840 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ZNF534Q76KX8 674 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 GPBP1Q86WP2 473 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 ANKRD13CQ8N6S4 541 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 DCPSQ96C86 337 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 GBP3Q9H0R5 595 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 TDRD3Q9H7E2 651 aaKnown RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 PAK6Q9NQU5 681 aaPredicted RBP8.45□□□□□ -1.06
CNOT4-201ENST00000315544 AMACRQ9UHK6 382 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 TRPC6Q9Y210 931 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 USP3Q9Y6I4 520 aa8.45□□□□□ -1.06
CNOT4-201ENST00000315544 PHF2O75151 1096 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 CELF2O95319 508 aaKnown RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ALDH1A1P00352 501 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 LDHCP07864 332 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 COL6A1P12109 1028 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 GAP43P17677 238 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 TRIM21P19474 475 aaKnown RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ICAM3P32942 547 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ARL2P36404 184 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 NUMBP49757 651 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 GPX6P59796 221 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 C11orf91Q3C1V1 193 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 SUPT20HL1Q3ZLR7 823 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ABHD15Q6UXT9 468 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 CYFIP1Q7L576 1253 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 FBXO25Q8TCJ0 367 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 SSU72Q9NP77 194 aaKnown RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 NEU3Q9UQ49 428 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ACTL7BQ9Y614 415 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 CDH23Q9H251 3354 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 NUP210Q8TEM1 1887 aaPredicted RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 DAPK3O43293 454 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 SGPL1O95470 568 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 GSTA1P08263 222 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ABHD2P08910 425 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 GTF2A2P52657 109 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 GCNT1Q02742 428 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 SLC9C1Q4G0N8 1177 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 ZNF467Q7Z7K2 595 aaPredicted RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 SLC47A2Q86VL8 602 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 JAMLQ86YT9 394 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 TMC2Q8TDI7 906 aa8.44□□□□□ -1.06
CNOT4-201ENST00000315544 PTCD3Q96EY7 689 aaKnown RBP8.44□□□□□ -1.06
CNOT4-201ENST00000315544 CCDC42Q96M95 316 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms