RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 MYO1DO94832 1006 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 CABP4P57796 275 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PREPLQ4J6C6 727 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 C6orf52Q5T4I8 152 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF280DQ6N043 979 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 NSL1Q96IY1 281 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ST7Q9NRC1 585 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 MRPL39Q9NYK5 338 aaKnown RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 WDR19Q8NEZ3 1342 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 KDM5CP41229 1560 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 A0A0G2JND7 137 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 CCDC182A6NF36 153 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 M0QX08 132 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PRLP01236 227 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 FESP07332 822 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PLS3P13797 630 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PMLP29590 882 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 FAPQ12884 760 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 LBRQ14739 615 aaKnown RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 SLC35F6Q8N357 371 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PIGOQ8TEQ8 1089 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 SYTL2Q9HCH5 934 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 CRNNQ9UBG3 495 aaPredicted RBP5.09□□□□□ -1.59
CSMD3-201ENST00000297405 TPRKBQ9Y3C4 175 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 QRICH2Q9H0J4 1663 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 MFAP3LO75121 409 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 FAM58BPP0C7Q3 252 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 LPCAT2Q7L5N7 544 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF554Q86TJ5 538 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 SLC30A5Q8TAD4 765 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 ADA2Q9NZK5 511 aa5.09□□□□□ -1.59
CSMD3-201ENST00000297405 PHF2O75151 1096 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 PRLRP16471 622 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ANXA11P50995 505 aaKnown RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 P3H1Q32P28 736 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 SLFN12LQ6IEE8 588 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC137Q6PK04 289 aaKnown RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 KRT35Q92764 455 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 CD3EAPO15446 510 aaKnown RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 PRIM2P49643 509 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 PITRM1Q5JRX3 1037 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 P3H2Q8IVL5 708 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ACOT12Q8WYK0 555 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 NARS2Q96I59 477 aaKnown RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 NMRK1Q9NWW6 199 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 RRN3Q9NYV6 651 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 COL17A1Q9UMD9 1497 aaPredicted RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 MROH7-TTC4A0A0A0MT08 1334 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ITIH6Q6UXX5 1313 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 EIF4A3P38919 411 aaKnown RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 GP5P40197 560 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 SCTRP47872 440 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 RIPK1Q13546 671 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 MTHFD1LQ6UB35 978 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 TSHZ1Q6ZSZ6 1077 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 AKAP14Q86UN6 197 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ZSCAN29Q8IWY8 852 aaPredicted RBP5.09□□□□□ -1.6
CSMD3-201ENST00000297405 CHCHD4Q8N4Q1 142 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 ABTB2Q8N961 1025 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 TEKT3Q9BXF9 490 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 KLHL3Q9UH77 587 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 MYRFQ9Y2G1 1151 aa5.09□□□□□ -1.6
CSMD3-201ENST00000297405 TRPC5OSA6NMA1 111 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NPR2P20594 1047 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 PLTPP55058 493 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NAALADL2Q58DX5 795 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RSRC2Q7L4I2 434 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TXNDC2Q86VQ3 553 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 VPS45Q9NRW7 570 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MED13Q9UHV7 2174 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 FAM92AA1XBS5 289 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 H3BMM5 538 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 RAD51BO15315 384 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 POLR2MP0CAP2 368 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 HNMTP50135 292 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MFAP3P55082 362 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 KCNQ4P56696 695 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TSTA3Q13630 321 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MYBPC2Q14324 1141 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TMED2Q15363 201 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 KYNUQ16719 465 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 KIF19Q2TAC6 998 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM74Q86UV6 250 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM73Q86UV7 250 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 TPH2Q8IWU9 490 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 SNRNP27Q8WVK2 155 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 VPS33AQ96AX1 596 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 STN1Q9H668 368 aaKnown RBP5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MKLN1Q9UL63 735 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 MAP3K15Q6ZN16 1313 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 C15orf38-AP3S2A0A0A6YYH1 394 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 POC1B-GALNT4F8VUJ3 575 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 LPXNO60711 386 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ABCB5Q2M3G0 1257 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 NDUFAF6Q330K2 333 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ARL13BQ3SXY8 428 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 FAAH2Q6GMR7 532 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 ARPINQ7Z6K5 226 aa5.08□□□□□ -1.6
CSMD3-201ENST00000297405 DDX56Q9NY93 547 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms