RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SCYL1Q96KG9 808 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 PABPC3Q9H361 631 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 XIRP1Q702N8 1843 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 CRYBG1Q9Y4K1 1723 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 WNT7AO00755 349 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 WDR46O15213 610 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 HNRNPCP07910 306 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHH-201ENST00000297261 FXR2P51116 673 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHH-201ENST00000297261 KDSRQ06136 332 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 TTMPQ5BVD1 217 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 DNAJC24Q6P3W2 148 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 EEPD1Q7L9B9 569 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 FBXO25Q8TCJ0 367 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 EPS8L3Q8TE67 593 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 CFAP36Q96G28 342 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 LRGUKQ96M69 825 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 UBN1Q9NPG3 1134 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 TRPC6Q9Y210 931 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 IQANK1A0A1B0GTG1 560 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 RPS12P25398 132 aaKnown RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 IREB2P48200 963 aaKnown RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 GPS1Q13098 491 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 GMCL1Q96IK5 515 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 AGBL1Q96MI9 1066 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 TLR10Q9BXR5 811 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 ATP6V0A4Q9HBG4 840 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 SEPT9Q9UHD8 586 aaPredicted RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 CPP00450 1065 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 UBTFL6P0CB48 400 aaPredicted RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 TARSP26639 723 aaKnown RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 RPS6KA2Q15349 733 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 SPDYE2Q495Y8 402 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 PASD1Q8IV76 773 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 SPDYE1Q8NFV5 336 aaPredicted RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 LPAR1Q92633 364 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 SNF8Q96H20 258 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 ZNF711Q9Y462 761 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 CLDN3O15551 220 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 AP2B1P63010 937 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 PDIA2Q13087 525 aaKnown RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 PDXDC2PQ6P474 469 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 RASSF3Q86WH2 238 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 AFAP1L2Q8N4X5 818 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 CXorf38Q8TB03 319 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 CDKL2Q92772 493 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 ATP6V0A1Q93050 837 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 SPON1Q9HCB6 807 aa16.3■□□□□ 0.2
SHH-201ENST00000297261 XAB2Q9HCS7 855 aaKnown RBP16.3■□□□□ 0.2
SHH-201ENST00000297261 WNT10BO00744 389 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 MCF2LO15068 1137 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 GPC4O75487 556 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 PHEXP78562 749 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 MDH1BQ5I0G3 518 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 WDR75Q8IWA0 830 aaKnown RBP16.29■□□□□ 0.2
SHH-201ENST00000297261 CEP170P1Q96L14 293 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 C11orf70Q9BRQ4 267 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 MRIQ9BWK5 157 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 SUDS3Q9H7L9 328 aaPredicted RBP16.29■□□□□ 0.2
SHH-201ENST00000297261 ADAM22Q9P0K1 906 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 CCDC195A0A1B0GUA6 201 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 LRRIQ4A6NIV6 560 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 DNAJC8O75937 253 aaPredicted RBP16.29■□□□□ 0.2
SHH-201ENST00000297261 SLC12A2P55011 1212 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 CAV1Q03135 178 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 MTM1Q13496 603 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 GMCL1P1Q8NEA9 526 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 CCT6BQ92526 530 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 INTS2Q9H0H0 1204 aaKnown RBP16.29■□□□□ 0.2
SHH-201ENST00000297261 NAGPAQ9UK23 515 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 TMX2Q9Y320 296 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 DNAJC6O75061 913 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 ATG16L1Q676U5 607 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 DARS2Q6PI48 645 aaKnown RBP16.29■□□□□ 0.2
SHH-201ENST00000297261 SLC17A8Q8NDX2 589 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 MIEF2Q96C03 454 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 FAM118BQ9BPY3 351 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 TMEM206Q9H813 350 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 ALG6Q9Y672 507 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 PITPNM2Q9BZ72 1349 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 SKOR1P84550 965 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 KLHDC7AQ5VTJ3 777 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 DCLK2Q8N568 766 aa16.29■□□□□ 0.2
SHH-201ENST00000297261 PHF2O75151 1096 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 MDM2Q00987 491 aaPredicted RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 SHROOM1Q2M3G4 852 aaPredicted RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 SWT1Q5T5J6 900 aaKnown RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 PCGF5Q86SE9 256 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 C3orf20Q8ND61 904 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 PDZD8Q8NEN9 1154 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 TRIM56Q9BRZ2 755 aaKnown RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 KRT37O76014 449 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 CD58P19256 250 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 POLGP54098 1239 aaPredicted RBP16.28■□□□□ 0.2
SHH-201ENST00000297261 ARL4CP56559 192 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 GRB10Q13322 594 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 NT5DC1Q5TFE4 455 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 WNT8AQ9H1J5 351 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 PFDN4Q9NQP4 134 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 SEPT10Q9P0V9 454 aa16.28■□□□□ 0.2
SHH-201ENST00000297261 ROBO3Q96MS0 1386 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms