RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PAGR1Q9BTK6 254 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 DNAJC12Q9UKB3 198 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 POTECB2RU33 542 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 PRELPP51888 382 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 KRT33BQ14525 404 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SLC9A5Q14940 896 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SF3B3Q15393 1217 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 TRIM16LQ309B1 348 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 FAM20AQ96MK3 541 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 USP11P51784 963 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 RAD9BQ6WBX8 426 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 MRPS26Q9BYN8 205 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 AKT3Q9Y243 479 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PRG3Q9Y2Y8 225 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 TBC1D9BQ66K14 1250 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 SCARA5Q6ZMJ2 495 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 MPP6Q9NZW5 540 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 IGBP1P78318 339 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 DHX34Q14147 1143 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 CTTNQ14247 550 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 LBRQ14739 615 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 FAM47CQ5HY64 1035 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 SSU72P8A0A1W2PR75 194 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 HOXA13P31271 388 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PTK2BQ14289 1009 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 HIC1Q14526 733 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 FAM160B2Q86V87 743 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PYGMP11217 842 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 ARFIP2P53365 341 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PMS2P54278 862 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 SYN2Q92777 582 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 SNF8Q96H20 258 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 CDHR1Q96JP9 859 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 RUBCNLQ9H714 662 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 A0A0G2JLW4 131 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 LONP2Q86WA8 852 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 REXO1L1PQ8IX06 675 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 DAGLBQ8NCG7 672 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 FAM84BQ96KN1 310 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PRMT1Q99873 361 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 PARP4Q9UKK3 1724 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 FHOD1Q9Y613 1164 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 ESYT3A0FGR9 886 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 TMEM154Q6P9G4 183 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 DDIASQ8IXT1 998 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 CCT7Q99832 543 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 SRP68Q9UHB9 627 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 EIF3HO15372 352 aaKnown RBP eCLIP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 ENO1P06733 434 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 HIF1AQ16665 826 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 EXOC8Q8IYI6 725 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 RFFLQ8WZ73 363 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 HEXIM2Q96MH2 286 aaKnown RBP10.41□□□□□ -0.74
COL6A3-201ENST00000295550 CYP26B1Q9NR63 512 aa10.41□□□□□ -0.74
COL6A3-201ENST00000295550 ANGPT2O15123 496 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 CCDC22O60826 627 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 MYBL1P10243 752 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 CD58P19256 250 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 FXR1P51114 621 aaKnown RBP eCLIP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 RUNX1T1Q06455 604 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 CDO1Q16878 200 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 SLC7A3Q8WY07 619 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 TUBGCP3Q96CW5 907 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 TMEM245Q9H330 911 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 POTEFA5A3E0 1075 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 POTEIP0CG38 1075 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 CDH2P19022 906 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 KDSRQ06136 332 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 MXD4Q14582 209 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 C12orf60Q5U649 245 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 POTEGQ6S5H5 508 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 POTEEQ6S8J3 1075 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 ADGRF4Q8IZF3 695 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 KRT87PA6NCN2 255 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 ARIH2O95376 493 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 UBXN2AP68543 259 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 KAZALD1Q96I82 304 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 UBE4BO95155 1302 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 PSAPP07602 524 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 MAPRE2Q15555 327 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 GPBP1L1Q9HC44 474 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 TOPAZ1Q8N9V7 1692 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 RSPH10B2B2RC85 870 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 RSPH10BP0C881 870 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 RBM41Q96IZ5 413 aaKnown RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 EML4Q9HC35 981 aaKnown RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 BATF3Q9NR55 127 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 OLFML3Q9NRN5 406 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 USE1Q9NZ43 259 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 NALCNQ8IZF0 1738 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 FAM187AA6NFU0 413 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 M0R3G1 203 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 STAG2Q8N3U4 1231 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 SLC44A5Q8NCS7 719 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 PRPF18Q99633 342 aaKnown RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 TMEM260Q9NX78 707 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 NFKBIL1Q9UBC1 381 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-201ENST00000295550 ABCB11O95342 1321 aa10.4□□□□□ -0.74
COL6A3-201ENST00000295550 RABGAP1LQ5R372 815 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 NUP93Q8N1F7 819 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms