RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PDGFRAP16234 1089 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ATICP31939 592 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 KLK7P49862 253 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ITPRIPL1Q6GPH6 555 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 CDC42EP5Q6NZY7 148 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ELMSAN1Q6PJG2 1045 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 TUFT1Q9NNX1 390 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ABCA8O94911 1581 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 FAM187AA6NFU0 413 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ATMINO43313 823 aaPredicted RBP12.11□□□□□ -0.47
USP53-201ENST00000274030 UPP2O95045 317 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 KCNA2P16389 499 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 SULT1E1P49888 294 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 RBBP7Q16576 425 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 TRIM72Q6ZMU5 477 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 C9orf72Q96LT7 481 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ECT2Q9H8V3 914 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 COG4Q9H9E3 785 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 SYCE1LA8MT33 242 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 SLC9A1P19634 815 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 CDK17Q00537 523 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 RABL6Q3YEC7 729 aaPredicted RBP12.11□□□□□ -0.47
USP53-201ENST00000274030 PRR5LQ6MZQ0 368 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 FAM117BQ6P1L5 589 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 SLC26A7Q8TE54 656 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 TRPC7Q9HCX4 862 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 APEX2Q9UBZ4 518 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 TJP2Q9UDY2 1190 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 TRIM33Q9UPN9 1127 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 C6orf222P0C671 652 aaPredicted RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 TPI1P60174 286 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 ADSSL1Q8N142 457 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 MCEEQ96PE7 176 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 FAM49BQ9NUQ9 324 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 PRR12Q9ULL5 1215 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 ASB14A6NK59 587 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 UCHL3P15374 230 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 EFNA5P52803 228 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 NCOA4Q13772 614 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 SNRNP35Q16560 246 aaKnown RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 CCSER1Q9C0I3 900 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 ZCWPW1Q9H0M4 648 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 SNX12Q9UMY4 172 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 FHOD1Q9Y613 1164 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 RFX7Q2KHR2 1363 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 SOX11P35716 441 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 FMO5P49326 533 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 NLRP11P59045 1033 aaKnown RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 DPYDQ12882 1025 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TRIM28Q13263 835 aaKnown RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 P3H1Q32P28 736 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TSGA10IPQ3SY00 556 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TMED8Q6PL24 325 aaPredicted RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 LRRC71Q8N4P6 559 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 RFWD2Q8NHY2 731 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 CLMNQ96JQ2 1002 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TNIP3Q96KP6 325 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 ZNF560Q96MR9 790 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TEX13BQ9BXU2 312 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 GOLPH3Q9H4A6 298 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 PLEKHA5Q9HAU0 1116 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 CDR2LQ86X02 465 aaPredicted RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 COG1Q8WTW3 980 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 PI4K2AQ9BTU6 479 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 MARCOQ9UEW3 520 aaPredicted RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 ZNRF3Q9ULT6 936 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP53-201ENST00000274030 ARHGAP31Q2M1Z3 1444 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 PLEKHG2Q9H7P9 1386 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 NR3C2P08235 984 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 SLC18A3Q16572 532 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 LONRF1Q17RB8 773 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 PRMT1Q99873 361 aaKnown RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 DBR1Q9UK59 544 aaKnown RBP12.1□□□□□ -0.47
USP53-201ENST00000274030 TFR2Q9UP52 801 aa12.1□□□□□ -0.47
USP53-201ENST00000274030 TCP11X1B4DZS4 312 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 MCF2P10911 925 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 KDSRQ06136 332 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 TBCCQ15814 346 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 XKR3Q5GH77 459 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 TTC23LQ6PF05 361 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 SPATA2LQ8IUW3 424 aaPredicted RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 OR2W6PQ8NHA6 318 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 ATL2Q8NHH9 583 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 LZICQ8WZA0 190 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 PBXIP1Q96AQ6 731 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 EPB41L4AQ9HCS5 686 aaPredicted RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 RAB6BQ9NRW1 208 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 PFASO15067 1338 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 ASAP2O43150 1006 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 DGAT1O75907 488 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 WEE2P0C1S8 567 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 IFNA8P32881 189 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 HSD17B4P51659 736 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 ALDH18A1P54886 795 aaKnown RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 E4F1Q66K89 784 aaPredicted RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 ALDH8A1Q9H2A2 487 aaPredicted RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.09□□□□□ -0.47
USP53-201ENST00000274030 OVOS2A0A0G2JMS6 1433 aa12.09□□□□□ -0.47
USP53-201ENST00000274030 OVOS2A0A0J9YW53 1432 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms