RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	FAR8	Q05040	523 aa		4.8	□□□□□ -1.64
CSL4	YNL232W	YPR127W	Q06494	345 aa		4.8	□□□□□ -1.64
CSL4	YNL232W	MCT1	Q12283	360 aa		4.8	□□□□□ -1.64
CSL4	YNL232W	PET9	P18239	318 aa	Known RBP	4.79	□□□□□ -1.64
CSL4	YNL232W	YCR100C	P25606	316 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	PPA2	P28239	310 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	FIG1	P38224	298 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	YIL077C	P40508	320 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	PUS4	P48567	403 aa	Known RBP	4.79	□□□□□ -1.64
CSL4	YNL232W	YGL235W	P53071	178 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	YNL181W	P53878	407 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	VPS60	Q03390	229 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	YDR391C	Q04170	232 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	IPK1	Q06667	281 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	LOT6	Q07923	191 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	MIM1	Q08176	113 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	HRT1	Q08273	121 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	YLR108C	Q12259	485 aa		4.79	□□□□□ -1.64
CSL4	YNL232W	TDH1	P00360	332 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	PDE2	P06776	526 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	ARO3	P14843	370 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
CSL4	YNL232W	FEN2	P25621	512 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	TIF3	P34167	436 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	ECM15	P35195	104 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	SDS22	P36047	338 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	YKL071W	P36086	256 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	DUO1	P53168	247 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	ECM18	Q04623	453 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	GTB1	Q04924	702 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	ATG33	Q06485	197 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	ARR2	Q06597	130 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	VPS36	Q06696	566 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	MFG1	Q07684	458 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	RRS1	Q08746	203 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	USB1	Q12208	290 aa	Known RBP	4.78	□□□□□ -1.64
CSL4	YNL232W	RBD2	Q12270	262 aa		4.78	□□□□□ -1.64
CSL4	YNL232W	YOL163W	P0CF20	169 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
CSL4	YNL232W	APL3	P38065	1025 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	GPI18	P38211	433 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	MRX1	P40050	688 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	FLX1	P40464	311 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	PFS2	P42841	465 aa	Known RBP	4.77	□□□□□ -1.65
CSL4	YNL232W	GEP7	P53171	287 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	MRPS17	Q03246	237 aa	Predicted RBP	4.77	□□□□□ -1.65
CSL4	YNL232W	NNT1	Q05874	261 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	ATG26	Q06321	1198 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	LUC7	Q07508	261 aa	Predicted RBP	4.77	□□□□□ -1.65
CSL4	YNL232W	ULA1	Q12059	462 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	NCA2	Q12374	616 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	MRX4	Q12467	430 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	CMC2	Q3E7A4	109 aa		4.77	□□□□□ -1.65
CSL4	YNL232W	RPC19	P28000	142 aa	Known RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	VPH2	P32341	215 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	YCR041W	P37265	110 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	YBR063C	P38083	404 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	TCM62	P38228	572 aa	Known RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	YBR096W	P38256	230 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	GDT1	P38301	280 aa	Predicted RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	RFC3	P38629	340 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	YRB2	P40517	327 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	PMT6	P42934	759 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	YDL183C	P48569	320 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	IMD4	P50094	524 aa	Known RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	TPS1	Q00764	495 aa	Known RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	MSS11	Q03825	758 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	SEC13	Q04491	297 aa	Known RBP	4.76	□□□□□ -1.65
CSL4	YNL232W	RNH202	Q05635	350 aa		4.76	□□□□□ -1.65
CSL4	YNL232W	EXO70	P19658	623 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	PCL1	P24867	279 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	RHB1	P25378	209 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	YCR051W	P25631	222 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	MIG1	P27705	504 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	IES6	P32617	166 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	MRPL36	P36531	177 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	FAT1	P38225	669 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	NTC20	P38302	140 aa	Predicted RBP	4.75	□□□□□ -1.65
CSL4	YNL232W	ALP1	P38971	573 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	PUG1	P40100	303 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	MSC3	Q05812	728 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	BCP1	Q06338	283 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	IRC25	Q07951	179 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	SKI7	Q08491	747 aa	Predicted RBP	4.75	□□□□□ -1.65
CSL4	YNL232W	RKI1	Q12189	258 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	SFM1	Q12314	213 aa		4.75	□□□□□ -1.65
CSL4	YNL232W	ILV5	P06168	395 aa	Known RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	TPK2	P06245	380 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	PET494	P07390	489 aa	Predicted RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	ACH1	P32316	526 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	MSS1	P32559	526 aa	Predicted RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	ADH5	P38113	351 aa	Known RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	DIA3	P52290	468 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	BNA7	Q04066	261 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	SNO4	Q04902	237 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	SNT309	Q06091	175 aa	Predicted RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	HSP33	Q08914	237 aa	Known RBP	4.74	□□□□□ -1.65
CSL4	YNL232W	HSP32	Q08992	237 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	FCY22	Q12119	530 aa		4.74	□□□□□ -1.65
CSL4	YNL232W	SEN2	P16658	377 aa		4.73	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms