RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CEP57Q86XR8 500 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 DAW1Q8N136 415 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 KREMEN2Q8NCW0 462 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 RIN2Q8WYP3 895 aaPredicted RBP11.34□□□□□ -0.59
SCN1A-222ENST00000642141 KIFAP3Q92845 792 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PBXIP1Q96AQ6 731 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PRIMPOLQ96LW4 560 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 TBC1D32Q96NH3 1257 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 ADPGKQ9BRR6 497 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 HERC2P3Q9BVR0 1158 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 MAN1C1Q9NR34 630 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 DZANK1Q9NVP4 752 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 NR2E1Q9Y466 385 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 CCDC195A0A1B0GUA6 201 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 LAD1O00515 517 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 SLC16A4O15374 487 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 RFPL2O75678 378 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 HARSP12081 509 aaKnown RBP11.33□□□□□ -0.6
SCN1A-222ENST00000642141 MUTP22033 750 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 EFNA5P52803 228 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 GRIK3Q13003 919 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 DHX8Q14562 1220 aaKnown RBP11.33□□□□□ -0.6
SCN1A-222ENST00000642141 HSP90AA2PQ14568 343 aaPredicted RBP11.33□□□□□ -0.6
SCN1A-222ENST00000642141 PTPN21Q16825 1174 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 RILPL1Q5EBL4 403 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 RINT1Q6NUQ1 792 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 FUT10Q6P4F1 479 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 NECTIN4Q96NY8 510 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 PNMA5Q96PV4 448 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 SFXN1Q9H9B4 322 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 KMT5AQ9NQR1 393 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 ADAM28Q9UKQ2 775 aa11.33□□□□□ -0.6
SCN1A-222ENST00000642141 KIF4AO95239 1232 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 EFEMP2O95967 443 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 PDGFBP01127 241 aaPredicted RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 THP07101 528 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 ADH1AP07327 375 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 PRPHP41219 470 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 ATP2C1P98194 919 aaPredicted RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 DSG1Q02413 1049 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 CACNB1Q02641 598 aaPredicted RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 TUSC3Q13454 348 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 USP41Q3LFD5 358 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 RTP2Q5QGT7 225 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 IER5LQ5T953 404 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 FAM171A1Q5VUB5 890 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 C1orf186Q6ZWK4 172 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 GPR149Q86SP6 731 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 CEP120Q8N960 986 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 TDRD5Q8NAT2 981 aaKnown RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 ST13P5Q8NFI4 369 aaPredicted RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 CDK5RAP3Q96JB5 506 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 MFSD14AQ96MC6 490 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 TCHPQ9BT92 498 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 TARS2Q9BW92 718 aaKnown RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 CHST7Q9NS84 486 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 FOXD4L1Q9NU39 408 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 STK39Q9UEW8 545 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.32□□□□□ -0.6
SCN1A-222ENST00000642141 STK24Q9Y6E0 443 aa11.32□□□□□ -0.6
SCN1A-222ENST00000642141 VPS37CA5D8V6 355 aaPredicted RBP11.31□□□□□ -0.6
SCN1A-222ENST00000642141 I3L4J1 428 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 TGM5O43548 720 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 BRD1O95696 1058 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 GLUD1P00367 558 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 GRIN1Q05586 938 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 MAPK7Q13164 816 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 DMP1Q13316 513 aaPredicted RBP11.31□□□□□ -0.6
SCN1A-222ENST00000642141 DCAF4L1Q3SXM0 396 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 ZNF568Q3ZCX4 644 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 SEZ6Q53EL9 994 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 TAS1R3Q7RTX0 852 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 RNF168Q8IYW5 571 aaPredicted RBP11.31□□□□□ -0.6
SCN1A-222ENST00000642141 ZBTB45Q96K62 511 aaPredicted RBP11.31□□□□□ -0.6
SCN1A-222ENST00000642141 DRC1Q96MC2 740 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 ACO2Q99798 780 aaKnown RBP11.31□□□□□ -0.6
SCN1A-222ENST00000642141 GOLGA2P5Q9HBQ8 144 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 RXFP1Q9HBX9 757 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 SSX2IPQ9Y2D8 614 aa11.31□□□□□ -0.6
SCN1A-222ENST00000642141 ADAM12O43184 909 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 PLA2G4BP0C869 781 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 MCM2P49736 904 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 CLCNKBP51801 687 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 SLC12A3P55017 1021 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 SIGLEC14Q08ET2 396 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 NAB2Q15742 525 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 TMEM130Q8N3G9 435 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 LRRC15Q8TF66 581 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 SMG7Q92540 1137 aaKnown RBP11.3□□□□□ -0.6
SCN1A-222ENST00000642141 ASIC4Q96FT7 647 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 TTPALQ9BTX7 342 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 MRPL4Q9BYD3 311 aaKnown RBP11.3□□□□□ -0.6
SCN1A-222ENST00000642141 CDT1Q9H211 546 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 PIDD1Q9HB75 910 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 ANKFY1Q9P2R3 1169 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 TNFSF13BQ9Y275 285 aa11.3□□□□□ -0.6
SCN1A-222ENST00000642141 SF3B1O75533 1304 aaKnown RBP eCLIP11.3□□□□□ -0.6
SCN1A-222ENST00000642141 TDRD15B5MCY1 1934 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 TECTAO75443 2155 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SMIM28A0A1B0GU29 152 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms