RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 CLTAP09496 248 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 HARSP12081 509 aaKnown RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 SLC9A1P19634 815 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 FGFR4P22455 802 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 PON1P27169 355 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 HOXA11P31270 313 aaPredicted RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 GCLMP48507 274 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 CTCFP49711 727 aaPredicted RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 FXR1P51114 621 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLN6-223ENST00000637823 ZBED6P86452 979 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 MYL7Q01449 175 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 TSR1Q2NL82 804 aaKnown RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 DCAF4L1Q3SXM0 396 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 NOTUMQ6P988 496 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 BRSK2Q8IWQ3 736 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 THNSL1Q8IYQ7 743 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 EHBP1Q8NDI1 1231 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 CCDC112Q8NEF3 446 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 OR8K1Q8NGG5 319 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 LSM14BQ9BX40 385 aaKnown RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 KCNF1Q9H3M0 494 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 TMX1Q9H3N1 280 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 TMEM8AQ9HCN3 771 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 FAM207AQ9NSI2 230 aaPredicted RBP12.77□□□□□ -0.37
CLN6-223ENST00000637823 CEP72Q9P209 647 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 NOD1Q9Y239 953 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 DAAM1Q9Y4D1 1078 aa12.77□□□□□ -0.37
CLN6-223ENST00000637823 HTTP42858 3142 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 RNF225M0QZC1 329 aaPredicted RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 NOL4O94818 638 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 IL18RAPO95256 599 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CHRNA1P02708 482 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 DLATP10515 647 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 KRT9P35527 623 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 THPOP40225 353 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CDK7P50613 346 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 LBX1P52954 281 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 AP3M2P53677 418 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 GOLGA8FQ08AF8 430 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 MGAT3Q09327 533 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 GOLGA8DPQ0D2H9 430 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 LRMPQ12912 555 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CBWD6Q4V339 395 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 SEZ6Q53EL9 994 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CBWD3Q5JTY5 395 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 FAM26DQ5JW98 314 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CBWD5Q5RIA9 395 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 ZBTB41Q5SVQ8 909 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 KLHDC7AQ5VTJ3 777 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 KRT39Q6A163 491 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 DPY19L2P1Q6NXN4 242 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 SLC27A1Q6PCB7 646 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 CDR2LQ86X02 465 aaPredicted RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 TMEM40Q8WWA1 233 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 WNT8BQ93098 351 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 POP1Q99575 1024 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 DNAJC7Q99615 494 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 NAA15Q9BXJ9 866 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 SENP6Q9GZR1 1112 aaPredicted RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 CRISPLD2Q9H0B8 497 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 TMEM117Q9H0C3 514 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 NUCKS1Q9H1E3 243 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 RPF1Q9H9Y2 349 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 PDE11AQ9HCR9 933 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 TRMT13Q9NUP7 481 aaKnown RBP12.76□□□□□ -0.37
CLN6-223ENST00000637823 AGPAT5Q9NUQ2 364 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 GCNT4Q9P109 453 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 FBXL5Q9UKA1 691 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 ZKSCAN5Q9Y2L8 839 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 COQ4Q9Y3A0 265 aa12.76□□□□□ -0.37
CLN6-223ENST00000637823 SGPL1O95470 568 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 MYCP01106 439 aaPredicted RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 STAG3L1P0CL83 205 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 SKILP12757 684 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 TNNI1P19237 187 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 TNFSF9P41273 254 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 MXI1P50539 228 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 CCZ1BP86790 482 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 CCZ1P86791 482 aaPredicted RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 PDCD11Q14690 1871 aaKnown RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 RALGAPA2Q2PPJ7 1873 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 TRIM71Q2Q1W2 868 aaKnown RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 EPC2Q52LR7 807 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 TRIM65Q6PJ69 517 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 C15orf39Q6ZRI6 1047 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 CACNA2D4Q7Z3S7 1137 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 ZSCAN30Q86W11 494 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 LMO3Q8TAP4 145 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 ZNF516Q92618 1163 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 DHX38Q92620 1227 aaKnown RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 ARMC5Q96C12 935 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 ZNF333Q96JL9 665 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 CGRRF1Q99675 332 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 BAG1Q99933 345 aaPredicted RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 INTS2Q9H0H0 1204 aaKnown RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 TRPV6Q9H1D0 765 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 GANQ9H2C0 597 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 SIX2Q9NPC8 291 aa12.75□□□□□ -0.37
CLN6-223ENST00000637823 NOC2LQ9Y3T9 749 aaKnown RBP12.75□□□□□ -0.37
CLN6-223ENST00000637823 SQORQ9Y6N5 450 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms