RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CPSF3Q9UKF6 684 aaKnown RBP20■□□□□ 0.79
CLN3-254ENST00000637050 GINS2Q9Y248 185 aa20■□□□□ 0.79
CLN3-254ENST00000637050 A0A1B0GUA9 196 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 RPLP2P05387 115 aaKnown RBP19.99■□□□□ 0.79
CLN3-254ENST00000637050 MCF2P10911 925 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 KCNJ6P48051 423 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 MXI1P50539 228 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 WNT7BP56706 349 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 CETN1Q12798 172 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 SNX17Q15036 470 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 EPC2Q52LR7 807 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 SEZ6Q53EL9 994 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 RPAINQ86UA6 219 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 CDR2LQ86X02 465 aaPredicted RBP19.99■□□□□ 0.79
CLN3-254ENST00000637050 BRSK2Q8IWQ3 736 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 ARRDC4Q8NCT1 418 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 UNC93B1Q9H1C4 597 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 TMEM8AQ9HCN3 771 aa19.99■□□□□ 0.79
CLN3-254ENST00000637050 ARHGAP6O43182 974 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 DLATP10515 647 aaKnown RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 FGFR4P22455 802 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 HNRNPH3P31942 346 aaKnown RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 TNFSF9P41273 254 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 POLR2FP61218 127 aaKnown RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 MEA1Q16626 185 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 KRT39Q6A163 491 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 CACNA2D4Q7Z3S7 1137 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 EHBP1Q8NDI1 1231 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 TMEM40Q8WWA1 233 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 GLT1D1Q96MS3 346 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 FNBP1Q96RU3 617 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 CELF4Q9BZC1 486 aaKnown RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 INTS2Q9H0H0 1204 aaKnown RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 PDE11AQ9HCR9 933 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 PAK6Q9NQU5 681 aaPredicted RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 TOPORSQ9NS56 1045 aaPredicted RBP19.98■□□□□ 0.79
CLN3-254ENST00000637050 COQ4Q9Y3A0 265 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 CENPFP49454 3210 aa19.98■□□□□ 0.79
CLN3-254ENST00000637050 UCHL3P15374 230 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 HOXA11P31270 313 aaPredicted RBP19.97■□□□□ 0.79
CLN3-254ENST00000637050 MRPS6P82932 125 aaKnown RBP19.97■□□□□ 0.79
CLN3-254ENST00000637050 WDR59Q6PJI9 974 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 C15orf39Q6ZRI6 1047 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 CATSPER4Q7RTX7 472 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 RSPH3Q86UC2 560 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 THNSL1Q8IYQ7 743 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 ZNF516Q92618 1163 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 WNT8BQ93098 351 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 VTI1AQ96AJ9 217 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 PLAGL2Q9UPG8 496 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 POU5F1Q01860 360 aaKnown RBP19.97■□□□□ 0.79
CLN3-254ENST00000637050 PTGISQ16647 500 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 TSR1Q2NL82 804 aaKnown RBP19.97■□□□□ 0.79
CLN3-254ENST00000637050 SLC9C1Q4G0N8 1177 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 PDXDC1Q6P996 788 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 SV2AQ7L0J3 742 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 RRAGAQ7L523 313 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 TMTC1Q8IUR5 882 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 CGRRF1Q99675 332 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 NUCKS1Q9H1E3 243 aaKnown RBP19.97■□□□□ 0.79
CLN3-254ENST00000637050 NLRC4Q9NPP4 1024 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 PHF24Q9UPV7 400 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 DAAM1Q9Y4D1 1078 aa19.97■□□□□ 0.79
CLN3-254ENST00000637050 A0A1W2PQ45 241 aaPredicted RBP19.96■□□□□ 0.79
CLN3-254ENST00000637050 A0A1W2PQY0 241 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 LRRC53A6NM62 1247 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 AXLP30530 894 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 NCBP1Q09161 790 aaKnown RBP19.96■□□□□ 0.79
CLN3-254ENST00000637050 KYAT1Q16773 422 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 CEP120Q8N960 986 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 SLC43A3Q8NBI5 491 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 TRPV2Q9Y5S1 764 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 FHOD1Q9Y613 1164 aa19.96■□□□□ 0.79
CLN3-254ENST00000637050 PTPRJQ12913 1337 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 M0QZ92 97 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 ZNF500O60304 480 aaPredicted RBP19.95■□□□□ 0.78
CLN3-254ENST00000637050 TNNI1P19237 187 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 CDK17Q00537 523 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 PTK7Q13308 1070 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 SURF1Q15526 300 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 ENOX2Q16206 610 aaKnown RBP19.95■□□□□ 0.78
CLN3-254ENST00000637050 CYP26C1Q6V0L0 522 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 SYN2Q92777 582 aaPredicted RBP19.95■□□□□ 0.78
CLN3-254ENST00000637050 ADPGKQ9BRR6 497 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 ZNHIT6Q9NWK9 470 aaKnown RBP19.95■□□□□ 0.78
CLN3-254ENST00000637050 APEX2Q9UBZ4 518 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 MYO6Q9UM54 1294 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 CDY2AQ9Y6F7 541 aa19.95■□□□□ 0.78
CLN3-254ENST00000637050 SOWAHDA6NJG2 315 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 KBTBD13C9JR72 458 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 C4BPAP04003 597 aaKnown RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 CLTAP09496 248 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 MTFR1Q15390 333 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 DCAF4L1Q3SXM0 396 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 ZACNQ401N2 412 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 E4F1Q66K89 784 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 NOTUMQ6P988 496 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 WDR49Q8IV35 697 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 FBXL13Q8NEE6 735 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 KCND1Q9NSA2 647 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms