RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TMC2Q8TDI7 906 aa21.83■■□□□ 1.09
CLN3-250ENST00000636839 DNAJC7Q99615 494 aa21.83■■□□□ 1.09
CLN3-250ENST00000636839 KIAA1586Q9HCI6 787 aa21.83■■□□□ 1.09
CLN3-250ENST00000636839 RRAGDQ9NQL2 400 aaPredicted RBP21.83■■□□□ 1.09
CLN3-250ENST00000636839 FHOD1Q9Y613 1164 aa21.83■■□□□ 1.09
CLN3-250ENST00000636839 OGTO15294 1046 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 ERLIN2O94905 339 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 ZBED6P86452 979 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 PSMD6Q15008 389 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 SNX17Q15036 470 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 SEMA4DQ92854 862 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 FAM212AQ96EL1 285 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 OSBPL7Q9BZF2 842 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 INTS2Q9H0H0 1204 aaKnown RBP21.82■■□□□ 1.08
CLN3-250ENST00000636839 A0A1W2PQJ5 194 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 GTPBP10A4D1E9 387 aaKnown RBP21.82■■□□□ 1.08
CLN3-250ENST00000636839 LRRC53A6NM62 1247 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 MEFVO15553 781 aaPredicted RBP21.82■■□□□ 1.08
CLN3-250ENST00000636839 CTSHP09668 335 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 EIF4BP23588 611 aaKnown RBP21.82■■□□□ 1.08
CLN3-250ENST00000636839 PTGISQ16647 500 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 TMEM130Q8N3G9 435 aa21.82■■□□□ 1.08
CLN3-250ENST00000636839 CPSF3Q9UKF6 684 aaKnown RBP21.82■■□□□ 1.08
CLN3-250ENST00000636839 USP27XA6NNY8 438 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 KIAA0391O15091 583 aaKnown RBP21.81■■□□□ 1.08
CLN3-250ENST00000636839 LDHAP00338 332 aaKnown RBP21.81■■□□□ 1.08
CLN3-250ENST00000636839 UCHL3P15374 230 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 MXI1P50539 228 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 TAF2Q6P1X5 1199 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 RAD9BQ6WBX8 426 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 SV2AQ7L0J3 742 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 CATSPER4Q7RTX7 472 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 SERINC5Q86VE9 423 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 PRIMPOLQ96LW4 560 aa21.81■■□□□ 1.08
CLN3-250ENST00000636839 A0A1B0GUA9 196 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 ENOX2Q16206 610 aaKnown RBP21.8■■□□□ 1.08
CLN3-250ENST00000636839 SLC9C1Q4G0N8 1177 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CACNA2D4Q7Z3S7 1137 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 OR5B17Q8NGF7 314 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 TAS1R2Q8TE23 839 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 DEFB118Q96PH6 123 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 PLCB1Q9NQ66 1216 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CEP72Q9P209 647 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 A0A1W2PQ45 241 aaPredicted RBP21.8■■□□□ 1.08
CLN3-250ENST00000636839 A0A1W2PQY0 241 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 STX10O60499 249 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 TNNI1P19237 187 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 EPC2Q52LR7 807 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 IQCEQ6IPM2 695 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 PHLDB3Q6NSJ2 640 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 TOGARAM2Q6ZUX3 1019 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 SESTD1Q86VW0 696 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 EHBP1Q8NDI1 1231 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CCDC112Q8NEF3 446 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CCDC51Q96ER9 411 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CELF4Q9BZC1 486 aaKnown RBP21.8■■□□□ 1.08
CLN3-250ENST00000636839 CDY2AQ9Y6F7 541 aa21.8■■□□□ 1.08
CLN3-250ENST00000636839 CHRNA1P02708 482 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 PLEKP08567 350 aaPredicted RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 PNMA6AP0CW24 399 aaPredicted RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 CLDN10P78369 228 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 CDC42EP1Q00587 391 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 PDXDC1Q6P996 788 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 NME8Q8N427 588 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 GLT1D1Q96MS3 346 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 FNBP1Q96RU3 617 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 DESI2Q9BSY9 194 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 TRPV6Q9H1D0 765 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 TMEM8AQ9HCN3 771 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 TRMT1Q9NXH9 659 aaKnown RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 CXCL8P10145 99 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 FECHP22830 423 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 CRYBB1P53674 252 aaPredicted RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 MRPS6P82932 125 aaKnown RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 KRT39Q6A163 491 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 BRSK2Q8IWQ3 736 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 ZNF397Q8NF99 534 aaPredicted RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 DHX38Q92620 1227 aaKnown RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 PI4K2AQ9BTU6 479 aa21.79■■□□□ 1.08
CLN3-250ENST00000636839 EIF2AQ9BY44 585 aaKnown RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 NOC2LQ9Y3T9 749 aaKnown RBP21.79■■□□□ 1.08
CLN3-250ENST00000636839 STAG3L1P0CL83 205 aa21.78■■□□□ 1.08
CLN3-250ENST00000636839 TDRD10Q5VZ19 366 aaKnown RBP21.78■■□□□ 1.08
CLN3-250ENST00000636839 ARHGEF19Q8IW93 802 aa21.78■■□□□ 1.08
CLN3-250ENST00000636839 RNF208Q9H0X6 261 aa21.78■■□□□ 1.08
CLN3-250ENST00000636839 CXCL16Q9H2A7 254 aa21.78■■□□□ 1.08
CLN3-250ENST00000636839 PAK6Q9NQU5 681 aaPredicted RBP21.78■■□□□ 1.08
CLN3-250ENST00000636839 MOXD2PA6NHM9 499 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 C4BPAP04003 597 aaKnown RBP21.77■■□□□ 1.08
CLN3-250ENST00000636839 CCL5P13501 91 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 THPOP40225 353 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 ARID5AQ03989 594 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 RAPGEF1Q13905 1077 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 C15orf39Q6ZRI6 1047 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 NAA15Q9BXJ9 866 aaKnown RBP21.77■■□□□ 1.08
CLN3-250ENST00000636839 HES2Q9Y543 173 aa21.77■■□□□ 1.08
CLN3-250ENST00000636839 CABYRO75952 493 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 NPTXRO95502 500 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 MCF2P10911 925 aa21.77■■□□□ 1.07
CLN3-250ENST00000636839 MEA1Q16626 185 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms