RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 LMO3Q8TAP4 145 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 JAKMIP2Q96AA8 810 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 FAM213AQ9BRX8 229 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 CRACR2AQ9BSW2 395 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 STK33Q9BYT3 514 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 GCOM2Q9BZD3 368 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 TSGA10Q9BZW7 698 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 TMEM117Q9H0C3 514 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 EPN1Q9Y6I3 576 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 C17orf102A2RUQ5 167 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 F8VZ95 297 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 TRPA1O75762 1119 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 ERLIN2O94905 339 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 TBC1D8O95759 1140 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 EDN1P05305 212 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 SLC9A1P19634 815 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 STAT1P42224 750 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 MATR3P43243 847 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLN3-248ENST00000636355 NLRP11P59045 1033 aaKnown RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 GCNT1Q02742 428 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 PTPN11Q06124 597 aaPredicted RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 NCBP1Q09161 790 aaKnown RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 RAPGEF1Q13905 1077 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 ASIC2Q16515 512 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 CRELD2Q6UXH1 353 aaPredicted RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 TOGARAM2Q6ZUX3 1019 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 NT5DC4Q86YG4 428 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 C7orf31Q8N865 590 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 PLEKHO2Q8TD55 490 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 NLRP7Q8WX94 980 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 LENG1Q96BZ8 264 aaPredicted RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 FAXDC2Q96IV6 333 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 CCDC42Q96M95 316 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 SCLT1Q96NL6 688 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 TSPAN18Q96SJ8 248 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 ADPGKQ9BRR6 497 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 SEZ6LQ9BYH1 1024 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 HAUS4Q9H6D7 363 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 NHEJ1Q9H9Q4 299 aaPredicted RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 XPNPEP3Q9NQH7 507 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 GTF2IRD1Q9UHL9 959 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 CPSF3Q9UKF6 684 aaKnown RBP11.45□□□□□ -0.58
CLN3-248ENST00000636355 FHOD1Q9Y613 1164 aa11.45□□□□□ -0.58
CLN3-248ENST00000636355 A0A087WZ62 844 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 GOLGA8IPA6NC78 632 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 GOLGA8JA6NMD2 632 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 B4GALT4O60513 344 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CAND2O75155 1236 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 VTNP04004 478 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CLTAP09496 248 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CYP2C9P11712 490 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 SOX5P35711 763 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 GCLMP48507 274 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 KIF11P52732 1056 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 DLG4P78352 724 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 SPA17Q15506 151 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 TDRD12Q587J7 1177 aaKnown RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 GNASQ5JWF2 1037 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 C10orf76Q5T2E6 689 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 HGSNATQ68CP4 663 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 IQCEQ6IPM2 695 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 FAM43BQ6ZT52 329 aaPredicted RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 RSPH3Q86UC2 560 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CD302Q8IX05 232 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 REXO1L1PQ8IX06 675 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 RDH13Q8NBN7 331 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 KLHDC9Q8NEP7 349 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CD99L2Q8TCZ2 262 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 RAET1EQ8TD07 263 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 DHX38Q92620 1227 aaKnown RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 C16orf45Q96MC5 204 aaPredicted RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 NT5C1BQ96P26 610 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 FDXACB1Q9BRP7 624 aaPredicted RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 TSEN34Q9BSV6 310 aaKnown RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 HAPLN2Q9GZV7 340 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 CDT1Q9H211 546 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 ADAMTS10Q9H324 1103 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 DEF6Q9H4E7 631 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 FAM124BQ9H5Z6 455 aaPredicted RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 ASB7Q9H672 318 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 NLRC4Q9NPP4 1024 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 C1orf112Q9NSG2 853 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 SETD4Q9NVD3 440 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 ARHGAP20Q9P2F6 1191 aa11.44□□□□□ -0.58
CLN3-248ENST00000636355 DDX20Q9UHI6 824 aaKnown RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.44□□□□□ -0.58
CLN3-248ENST00000636355 A0A1B0GUA9 196 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 MOXD2PA6NHM9 499 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 USP27XA6NNY8 438 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 KRT86O43790 486 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 TSPAN1O60635 241 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 GPR32O75388 356 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 DARSP14868 501 aaKnown RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 TBXAS1P24557 533 aaPredicted RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 RGS19P49795 217 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 VAV2P52735 878 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 MFAP3P55082 362 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 ETF1P62495 437 aaKnown RBP11.43□□□□□ -0.58
CLN3-248ENST00000636355 KLHL30Q0D2K2 578 aa11.43□□□□□ -0.58
CLN3-248ENST00000636355 BMS1Q14692 1282 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms