RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 TAB2Q9NYJ8 693 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 CXCL10P02778 98 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 STAG3L1P0CL83 205 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 OSTNP61366 133 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 SARM1Q6SZW1 724 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 INTS8Q75QN2 995 aaKnown RBP22.39■■□□□ 1.17
CLN3-245ENST00000636172 ANKRD20A12PQ8NF67 263 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 PLEKHO2Q8TD55 490 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 TUBGCP2Q9BSJ2 902 aa22.39■■□□□ 1.17
CLN3-245ENST00000636172 TRIM6Q9C030 488 aaPredicted RBP22.39■■□□□ 1.17
CLN3-245ENST00000636172 RBAKQ9NYW8 714 aaPredicted RBP22.39■■□□□ 1.17
CLN3-245ENST00000636172 ANK1P16157 1881 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 SERPINC1P01008 464 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 ZSCAN20P17040 1043 aaPredicted RBP22.38■■□□□ 1.17
CLN3-245ENST00000636172 GRM5P41594 1212 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 COPB1P53618 953 aaKnown RBP22.38■■□□□ 1.17
CLN3-245ENST00000636172 PLCB2Q00722 1185 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 BFSP1Q12934 665 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 ENOX2Q16206 610 aaKnown RBP22.38■■□□□ 1.17
CLN3-245ENST00000636172 KYAT1Q16773 422 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 ADAM2Q99965 735 aa22.38■■□□□ 1.17
CLN3-245ENST00000636172 NXF3Q9H4D5 531 aaKnown RBP22.38■■□□□ 1.17
CLN3-245ENST00000636172 MEFVO15553 781 aaPredicted RBP22.37■■□□□ 1.17
CLN3-245ENST00000636172 CLTAP09496 248 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 KRT13P13646 458 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 PRKCSHP14314 528 aaPredicted RBP22.37■■□□□ 1.17
CLN3-245ENST00000636172 RAG1P15918 1043 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 WNT7BP56706 349 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 MCCD1P59942 119 aaPredicted RBP22.37■■□□□ 1.17
CLN3-245ENST00000636172 MAN2A1Q16706 1144 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 MIIPQ5JXC2 388 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 BRSK2Q8IWQ3 736 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 SMG8Q8ND04 991 aaKnown RBP22.37■■□□□ 1.17
CLN3-245ENST00000636172 DBF4BQ8NFT6 615 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 LINC01599Q8WXQ3 324 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 SEPT8Q92599 483 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 TRAIPQ9BWF2 469 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 VPS16Q9H269 839 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 FAM105AQ9NUU6 356 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 HES2Q9Y543 173 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 IPPQ9Y573 584 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 PCDHB2Q9Y5E7 798 aa22.37■■□□□ 1.17
CLN3-245ENST00000636172 CXCL8P10145 99 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 RFC2P35250 354 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 VAMP7P51809 220 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 PSMD6Q15008 389 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 TCTN1Q2MV58 587 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 SLC35C1Q96A29 364 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 CCDC127Q96BQ5 260 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 VWCEQ96DN2 955 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 NAP1L5Q96NT1 182 aaPredicted RBP22.36■■□□□ 1.17
CLN3-245ENST00000636172 SNTG2Q9NY99 539 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 IFNKQ9P0W0 207 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.36■■□□□ 1.17
CLN3-245ENST00000636172 CITO14578 2027 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 TRIM49P0CI25 452 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 TRIM49CP0CI26 452 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 DLG4P78352 724 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 DCAF17Q5H9S7 520 aaPredicted RBP22.36■■□□□ 1.17
CLN3-245ENST00000636172 C1orf220Q5T0J3 134 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 DEFB128Q7Z7B8 93 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 RTN4RL1Q86UN2 441 aaPredicted RBP22.36■■□□□ 1.17
CLN3-245ENST00000636172 C7orf61Q8IZ16 206 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 TMC2Q8TDI7 906 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 PARD3BQ8TEW8 1205 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 APBB2Q92870 758 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 CCDC94Q9BW85 323 aaPredicted RBP22.36■■□□□ 1.17
CLN3-245ENST00000636172 FTHL17Q9BXU8 183 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 RPF1Q9H9Y2 349 aaKnown RBP22.36■■□□□ 1.17
CLN3-245ENST00000636172 PCDH10Q9P2E7 1040 aa22.36■■□□□ 1.17
CLN3-245ENST00000636172 RALGAPA2Q2PPJ7 1873 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 A0A1B0GTH6 734 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 UBASH3AP57075 661 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 POU5F1Q01860 360 aaKnown RBP22.35■■□□□ 1.17
CLN3-245ENST00000636172 ENPEPQ07075 957 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 VWA3BQ502W6 1294 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 TCERG1LQ5VWI1 586 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 MFSD5Q6N075 450 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 ACAP3Q96P50 834 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 HTATIP2Q9BUP3 242 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 TSPYL2Q9H2G4 693 aaPredicted RBP22.35■■□□□ 1.17
CLN3-245ENST00000636172 RNF39Q9H2S5 420 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 PDE11AQ9HCR9 933 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 RGS18Q9NS28 235 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 INTS13Q9NVM9 706 aa22.35■■□□□ 1.17
CLN3-245ENST00000636172 A0A0U1RQF3 1178 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 LRRIQ3A6PVS8 624 aaPredicted RBP22.34■■□□□ 1.17
CLN3-245ENST00000636172 ZNF623O75123 536 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 RAB27AP51159 221 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 PPP2R3AQ06190 1150 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 SLC10A6Q3KNW5 377 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 POP1Q99575 1024 aaKnown RBP22.34■■□□□ 1.17
CLN3-245ENST00000636172 APOL6Q9BWW8 343 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 TRIM5Q9C035 493 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 XPO4Q9C0E2 1151 aaKnown RBP22.34■■□□□ 1.17
CLN3-245ENST00000636172 NDST4Q9H3R1 872 aa22.34■■□□□ 1.17
CLN3-245ENST00000636172 RTN4Q9NQC3 1192 aaKnown RBP22.34■■□□□ 1.17
CLN3-245ENST00000636172 LGALS16A8MUM7 142 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 RECQL4O94761 1208 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 TPM2P07951 284 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms