RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CPSF2Q9P2I0 782 aaKnown RBP13.43□□□□□ -0.26
LIG1-221ENST00000613670 HAO1Q9UJM8 370 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 PRR12Q9ULL5 1215 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 TGFB1I1O43294 461 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 SNX3O60493 162 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 GGPS1O95749 300 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 SPATA31C1P0DKV0 1188 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 BRDTQ58F21 947 aaPredicted RBP13.43□□□□□ -0.26
LIG1-221ENST00000613670 NAIF1Q69YI7 327 aaPredicted RBP13.43□□□□□ -0.26
LIG1-221ENST00000613670 RSAD2Q8WXG1 361 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 RILPQ96NA2 401 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 FAM213AQ9BRX8 229 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 KCNMB3Q9NPA1 279 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 GPRC5CQ9NQ84 441 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 DNAJC8O75937 253 aaPredicted RBP13.42□□□□□ -0.26
LIG1-221ENST00000613670 ITIH2P19823 946 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CCND1P24385 295 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CNGA2Q16280 664 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 KRT39Q6A163 491 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 PDCD7Q8N8D1 485 aaKnown RBP13.42□□□□□ -0.26
LIG1-221ENST00000613670 CEP170P1Q96L14 293 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 MYH7P12883 1935 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CFAP69A5D8W1 941 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 RALAP11233 206 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CRYMQ14894 314 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 P3H1Q32P28 736 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 SYCP2LQ5T4T6 812 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CEP128Q6ZU80 1094 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 EXOC3L1Q86VI1 746 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 ATL2Q8NHH9 583 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CFAP61Q8NHU2 1237 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 SLC5A5Q92911 643 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 VTI1AQ96AJ9 217 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 VCXQ9H320 206 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 TRABDQ9H4I3 376 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 DENND3A2RUS2 1198 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 A8MUI8 341 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 BTNL10A8MVZ5 291 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 H0YGN5 161 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 EIF3DO15371 548 aaKnown RBP eCLIP13.42□□□□□ -0.26
LIG1-221ENST00000613670 MARSP56192 900 aaKnown RBP13.42□□□□□ -0.26
LIG1-221ENST00000613670 POLE2P56282 527 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CBWD2Q8IUF1 395 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 DTX3LQ8TDB6 740 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 TMEM237Q96Q45 408 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 ROPN1BQ9BZX4 212 aaPredicted RBP13.42□□□□□ -0.26
LIG1-221ENST00000613670 ROPN1Q9HAT0 212 aaPredicted RBP13.42□□□□□ -0.26
LIG1-221ENST00000613670 TUFT1Q9NNX1 390 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 CHST7Q9NS84 486 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 MCM8Q9UJA3 840 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 COG5Q9UP83 839 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 NFS1Q9Y697 457 aa13.42□□□□□ -0.26
LIG1-221ENST00000613670 DCCP43146 1447 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 ARP10275 920 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 YWHAGP61981 247 aaKnown RBP eCLIP13.41□□□□□ -0.26
LIG1-221ENST00000613670 DAB2IPQ5VWQ8 1189 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 CPNE8Q86YQ8 564 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 RASGEF1CQ8N431 466 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TTC17Q96AE7 1141 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TRAIPQ9BWF2 469 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 NPHS2Q9NP85 383 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 ZFP69BQ9UJL9 534 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TMEM59LQ9UK28 342 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 GTPBP10A4D1E9 387 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 CCDC160A6NGH7 325 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 SRRM3A6NNA2 597 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 MEIS2O14770 477 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 MYCNP04198 464 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 GSTA1P08263 222 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 XRCC4Q13426 336 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TMEM270Q6UE05 265 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 PRUNE1Q86TP1 453 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 NLRX1Q86UT6 975 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 LONP2Q86WA8 852 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 ARMC2Q8NEN0 867 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 FAM84AQ96KN4 292 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 POLR3CQ9BUI4 534 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 DNAJC18Q9H819 358 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 LRRC4CQ9HCJ2 640 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 C15orf41Q9Y2V0 281 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 MARF1Q9Y4F3 1742 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 ATXN2Q99700 1313 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 TMEM150BA6NC51 233 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 DDTLA6NHG4 134 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 FAM47DPA6NHR8 397 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 DDX3YO15523 660 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 SLITRK3O94933 977 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 GH1P01241 217 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 MMP13P45452 471 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 BASP1P80723 227 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 PDIA2Q13087 525 aaKnown RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 AP1ARQ63HQ0 302 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 FBXL13Q8NEE6 735 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 PYROXD1Q8WU10 500 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 ACSF2Q96CM8 615 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 OLFML3Q9NRN5 406 aa13.41□□□□□ -0.26
LIG1-221ENST00000613670 TOPORSQ9NS56 1045 aaPredicted RBP13.41□□□□□ -0.26
LIG1-221ENST00000613670 GINM1Q9NU53 330 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms