RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RBAKQ9NYW8 714 aaPredicted RBP15.49■□□□□ 0.07
USP39-220ENST00000613444 CPSF3Q9UKF6 684 aaKnown RBP15.49■□□□□ 0.07
USP39-220ENST00000613444 GINS2Q9Y248 185 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 PTPRJQ12913 1337 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 RBAK-RBAKDNI3L0D1 243 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 STX10O60499 249 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 EIF4BP23588 611 aaKnown RBP15.49■□□□□ 0.07
USP39-220ENST00000613444 ITGA7Q13683 1181 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 SNX17Q15036 470 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 FAM47CQ5HY64 1035 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 C15orf39Q6ZRI6 1047 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 RPAINQ86UA6 219 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 BRSK2Q8IWQ3 736 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 ZNF710Q8N1W2 664 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 CEP120Q8N960 986 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 PDE11AQ9HCR9 933 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 CEP72Q9P209 647 aa15.49■□□□□ 0.07
USP39-220ENST00000613444 LRRN2O75325 713 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 GTF2H1P32780 548 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 CRYBB1P53674 252 aaPredicted RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 PCBP1Q15365 356 aaKnown RBP eCLIP15.48■□□□□ 0.07
USP39-220ENST00000613444 MEA1Q16626 185 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 E4F1Q66K89 784 aaPredicted RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 FAM84AQ96KN4 292 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 TMEM8AQ9HCN3 771 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 FBXL5Q9UKA1 691 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 COQ4Q9Y3A0 265 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 N4BP1O75113 896 aaKnown RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 DLATP10515 647 aaKnown RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 UCHL3P15374 230 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 HNRNPH3P31942 346 aaKnown RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 MXI1P50539 228 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 POLR2FP61218 127 aaKnown RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 HSP90AA2PQ14568 343 aaPredicted RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 MTFR1Q15390 333 aa15.48■□□□□ 0.07
USP39-220ENST00000613444 C17orf53Q8N3J3 647 aaPredicted RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 NAA15Q9BXJ9 866 aaKnown RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 AJAP1Q9UKB5 411 aaPredicted RBP15.48■□□□□ 0.07
USP39-220ENST00000613444 MEFVO15553 781 aaPredicted RBP15.47■□□□□ 0.07
USP39-220ENST00000613444 ERLIN2O94905 339 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 MCF2P10911 925 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 MRPS6P82932 125 aaKnown RBP15.47■□□□□ 0.07
USP39-220ENST00000613444 KRT39Q6A163 491 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 SV2AQ7L0J3 742 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 USP37Q86T82 979 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 TMEM192Q8IY95 271 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 SLC43A3Q8NBI5 491 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 EHBP1Q8NDI1 1231 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 CELF4Q9BZC1 486 aaKnown RBP15.47■□□□□ 0.07
USP39-220ENST00000613444 INTS2Q9H0H0 1204 aaKnown RBP15.47■□□□□ 0.07
USP39-220ENST00000613444 NLRC4Q9NPP4 1024 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 PLAGL2Q9UPG8 496 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 FHOD1Q9Y613 1164 aa15.47■□□□□ 0.07
USP39-220ENST00000613444 A0A1W2PQ45 241 aaPredicted RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 A0A1W2PQY0 241 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 KCNJ6P48051 423 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 PTPN11Q06124 597 aaPredicted RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 MGAT3Q09327 533 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ENOX2Q16206 610 aaKnown RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 PTGISQ16647 500 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 PDXDC1Q6P996 788 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 THNSL1Q8IYQ7 743 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ARRDC4Q8NCT1 418 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 SEMA4DQ92854 862 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 GLT1D1Q96MS3 346 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 CHP1Q99653 195 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 PHF24Q9UPV7 400 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 RALGAPA2Q2PPJ7 1873 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 SOWAHDA6NJG2 315 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 LRRC53A6NM62 1247 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ARHGAP6O43182 974 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 CHRNA1P02708 482 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 C4BPAP04003 597 aaKnown RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 MSNP26038 577 aaKnown RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 TMEM132AQ24JP5 1023 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ZACNQ401N2 412 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 SLC9C1Q4G0N8 1177 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 LMBRD2Q68DH5 695 aaPredicted RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 GJB7Q6PEY0 223 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 RRAGAQ7L523 313 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 CATSPER4Q7RTX7 472 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ZNF397Q8NF99 534 aaPredicted RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 DHX38Q92620 1227 aaKnown RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 CGRRF1Q99675 332 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 TRMT13Q9NUP7 481 aaKnown RBP15.46■□□□□ 0.07
USP39-220ENST00000613444 CDY2AQ9Y6F7 541 aa15.46■□□□□ 0.07
USP39-220ENST00000613444 ZNF500O60304 480 aaPredicted RBP15.45■□□□□ 0.06
USP39-220ENST00000613444 MTF1Q14872 753 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 TRIM71Q2Q1W2 868 aaKnown RBP15.45■□□□□ 0.06
USP39-220ENST00000613444 IQCEQ6IPM2 695 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 PHLDB3Q6NSJ2 640 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 RAD9BQ6WBX8 426 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 CACNA2D4Q7Z3S7 1137 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 TAS1R2Q8TE23 839 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 FNBP1Q96RU3 617 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 SENP6Q9GZR1 1112 aaPredicted RBP15.45■□□□□ 0.06
USP39-220ENST00000613444 JAM2P57087 298 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 OSTNP61366 133 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 CDK17Q00537 523 aa15.45■□□□□ 0.06
USP39-220ENST00000613444 PDCD11Q14690 1871 aaKnown RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms