RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LRRC15Q8TF66 581 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 LEO1Q8WVC0 666 aaPredicted RBP21.19■□□□□ 0.98
UPF1-212ENST00000601689 HVCN1Q96D96 273 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 PANK4Q9NVE7 773 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 ZDHHC9Q9Y397 364 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 PCDHB13Q9Y5F0 798 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 EYSQ5T1H1 3165 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 CITO14578 2027 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 GOLGA6L4A6NEF3 574 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 NRP1O14786 923 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 DDHD2O94830 711 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 SLC11A1P49279 550 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 GTF2BQ00403 316 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 PLPP4Q5VZY2 271 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 SLFN12LQ6IEE8 588 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 TAS1R3Q7RTX0 852 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 DDX53Q86TM3 631 aaKnown RBP21.18■□□□□ 0.98
UPF1-212ENST00000601689 COLGALT2Q8IYK4 626 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 PABPC5Q96DU9 382 aaKnown RBP21.18■□□□□ 0.98
UPF1-212ENST00000601689 CDT1Q9H211 546 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 ST6GALNAC4Q9H4F1 302 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 IGFLR1Q9H665 355 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 SLC38A7Q9NVC3 462 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 CLDND1Q9NY35 253 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 DNAJB4Q9UDY4 337 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 USP25Q9UHP3 1055 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 KCNH3Q9ULD8 1083 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 MYO7AQ13402 2215 aa21.18■□□□□ 0.98
UPF1-212ENST00000601689 GCNT3O95395 438 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 CMA1P23946 247 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 DNAJB1P25685 340 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 TUSC3Q13454 348 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 SFR1Q86XK3 245 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 VPS52Q8N1B4 723 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 PTPRHQ9HD43 1115 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 KBTBD4Q9NVX7 518 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 FAM50BQ9Y247 325 aa21.17■□□□□ 0.98
UPF1-212ENST00000601689 PRG3Q9Y2Y8 225 aaPredicted RBP21.17■□□□□ 0.98
UPF1-212ENST00000601689 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.17■□□□□ 0.98
UPF1-212ENST00000601689 A0A087X0B3 334 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 EDN1P05305 212 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 PROZP22891 400 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 NMT1P30419 496 aaKnown RBP21.16■□□□□ 0.98
UPF1-212ENST00000601689 AFF1P51825 1210 aaKnown RBP21.16■□□□□ 0.98
UPF1-212ENST00000601689 ERVFC1P60507 584 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 OSTNP61366 133 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 ASIC1P78348 528 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 CAMK1Q14012 370 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 POSTNQ15063 836 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 TJAP1Q5JTD0 557 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 ZNF720Q7Z2F6 126 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 SYCP3Q8IZU3 236 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 DNAJC19Q96DA6 116 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 UBE2ZQ9H832 354 aaPredicted RBP21.16■□□□□ 0.98
UPF1-212ENST00000601689 OLFML3Q9NRN5 406 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 MIOSQ9NXC5 875 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 TRIP11Q15643 1979 aa21.16■□□□□ 0.98
UPF1-212ENST00000601689 TADA2AO75478 443 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 CXCL14O95715 111 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 PIGRP01833 764 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 IRS1P35568 1242 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 NRIP1P48552 1158 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 MCL1Q07820 350 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 DSC1Q08554 894 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 E2F4Q16254 413 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 PUS10Q3MIT2 529 aaKnown RBP21.15■□□□□ 0.98
UPF1-212ENST00000601689 KIAA1841Q6NSI8 718 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 RBM23Q86U06 439 aaKnown RBP21.15■□□□□ 0.98
UPF1-212ENST00000601689 MAP4K3Q8IVH8 894 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 ASB2Q96Q27 587 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 ACCSQ96QU6 501 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 TMEM206Q9H813 350 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 PRDM6Q9NQX0 595 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 PRUNE2Q8WUY3 3088 aa21.15■□□□□ 0.98
UPF1-212ENST00000601689 FSCN2O14926 492 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 XPOTO43592 962 aaKnown RBP21.14■□□□□ 0.97
UPF1-212ENST00000601689 CLTAP09496 248 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 CTSAP10619 480 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 KCNA5P22460 613 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 NDUFV1P49821 464 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 GSTCDQ8NEC7 633 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 STAMQ92783 540 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 ZBTB45Q96K62 511 aaPredicted RBP21.14■□□□□ 0.97
UPF1-212ENST00000601689 UROC1Q96N76 676 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 EMILIN2Q9BXX0 1053 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 TRIM9Q9C026 710 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 PLEKHA5Q9HAU0 1116 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 MRPL17Q9NRX2 175 aaKnown RBP21.14■□□□□ 0.97
UPF1-212ENST00000601689 TBC1D7Q9P0N9 293 aa21.14■□□□□ 0.97
UPF1-212ENST00000601689 URODP06132 367 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 SYKP43405 635 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 HYAL1Q12794 435 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 ELAVL2Q12926 359 aaKnown RBP21.13■□□□□ 0.97
UPF1-212ENST00000601689 EFHBQ8N7U6 833 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 MRPL43Q8N983 215 aaKnown RBP21.13■□□□□ 0.97
UPF1-212ENST00000601689 CCDC47Q96A33 483 aaKnown RBP21.13■□□□□ 0.97
UPF1-212ENST00000601689 C7orf25Q9BPX7 421 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 MSTO1Q9BUK6 570 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 RPF1Q9H9Y2 349 aaKnown RBP21.13■□□□□ 0.97
UPF1-212ENST00000601689 CIZ1Q9ULV3 898 aaPredicted RBP21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms