RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SASH3	O75995	380 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	PIGR	P01833	764 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	VTN	P04004	478 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	CYP2C9	P11712	490 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	GART	P22102	1010 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	CASP4	P49662	377 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	SMC1A	Q14683	1233 aa	Known RBP	12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	NBPF20	Q3BBV1	942 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	MAP9	Q49MG5	647 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	LHX8	Q68G74	356 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	SLFN12L	Q6IEE8	588 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	ZPBP2	Q6X784	338 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	ZNF410	Q86VK4	478 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	TRIM59	Q8IWR1	403 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	FAM186B	Q8IYM0	893 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	CCDC155	Q8N6L0	562 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	SH3TC2	Q8TF17	1288 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	CBWD1	Q9BRT8	395 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	CCDC113	Q9H0I3	377 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	ACBD3	Q9H3P7	528 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	VIPAS39	Q9H9C1	493 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	IFT122	Q9HBG6	1241 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	HSPBP1	Q9NZL4	362 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	PUF60	Q9UHX1	559 aa	Known RBP	12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	JRKL	Q9Y4A0	524 aa		12.69	□□□□□ -0.38
VRK3-223	ENST00000601341	MOXD2P	A6NHM9	499 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	RBAK-RBAKDN	I3L0D1	243 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	INO80B-WBP1	J3KQ70	363 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	PJA2	O43164	708 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	TREH	O43280	583 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	ABL1	P00519	1130 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	PRKCB	P05771	671 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	ADSS	P30520	456 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	SLC9C1	Q4G0N8	1177 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	ZNF771	Q7L3S4	317 aa	Predicted RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	RNF10	Q8N5U6	811 aa	Known RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	ARRDC4	Q8NCT1	418 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	PPP1R13L	Q8WUF5	828 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	NLRP7	Q8WX94	980 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	POMGNT1	Q8WZA1	660 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	PCMTD1	Q96MG8	357 aa	Predicted RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	SCLT1	Q96NL6	688 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	TSEN34	Q9BSV6	310 aa	Known RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	MRPL4	Q9BYD3	311 aa	Known RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	INO80B	Q9C086	356 aa	Predicted RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	FAM49A	Q9H0Q0	323 aa	Predicted RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	FZD8	Q9H461	694 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	PCIF1	Q9H4Z3	704 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	LUC7L	Q9NQ29	371 aa	Known RBP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	GTF2IRD1	Q9UHL9	959 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
VRK3-223	ENST00000601341	STYXL1	Q9Y6J8	313 aa		12.68	□□□□□ -0.38
VRK3-223	ENST00000601341		A0A087WZ62	844 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	CCDC66	A2RUB6	948 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	ACKR2	O00590	384 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	KIAA0391	O15091	583 aa	Known RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	MAPK13	O15264	365 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	TACC1	O75410	805 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	SEC31A	O94979	1220 aa	Known RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	GPC3	P51654	580 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	ACLY	P53396	1101 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	NLRP11	P59045	1033 aa	Known RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	HIC1	Q14526	733 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	FAM47C	Q5HY64	1035 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	TAF2	Q6P1X5	1199 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	SLC39A4	Q6P5W5	647 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	NME8	Q8N427	588 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	SECISBP2L	Q93073	1101 aa	Known RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	BORCS6	Q96GS4	357 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	ZNF668	Q96K58	619 aa	Predicted RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	TARS2	Q9BW92	718 aa	Known RBP	12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	PSD3	Q9NYI0	1048 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	CEP72	Q9P209	647 aa		12.67	□□□□□ -0.38
VRK3-223	ENST00000601341	ZNF200	P98182	395 aa	Predicted RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	MBTD1	Q05BQ5	628 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	FAM187B	Q17R55	369 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	RUFY4	Q6ZNE9	571 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	INTS8	Q75QN2	995 aa	Known RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	SESTD1	Q86VW0	696 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	NEK11	Q8NG66	645 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	BAP1	Q92560	729 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	VTI1A	Q96AJ9	217 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	PNKP	Q96T60	521 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	IFIH1	Q9BYX4	1025 aa	Known RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	KIAA1586	Q9HCI6	787 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	PRMT7	Q9NVM4	692 aa	Predicted RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	ATP8B3	O60423	1300 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	CLDN3	O15551	220 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	TOM1L1	O75674	476 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	RPLP2	P05387	115 aa	Known RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	KRT13	P13646	458 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	TCP1	P17987	556 aa	Known RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	KIF11	P52732	1056 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	PRPF4B	Q13523	1007 aa	Known RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	KIZ	Q2M2Z5	673 aa		12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	ASTE1	Q2TB18	679 aa	Predicted RBP	12.66	□□□□□ -0.38
VRK3-223	ENST00000601341	RDH13	Q8NBN7	331 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms