RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IRF2BP1Q8IU81 584 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 FAM114A1Q8IWE2 563 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 HACE1Q8IYU2 909 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 CEP120Q8N960 986 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 SMG8Q8ND04 991 aaKnown RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 EEF2KMTQ96G04 330 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 LBHD1Q9BQE6 289 aaPredicted RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 FAM213AQ9BRX8 229 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 CCDC94Q9BW85 323 aaPredicted RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 FANCLQ9NW38 375 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 BAIAP3O94812 1187 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 EOMESO95936 686 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 STAG3L1P0CL83 205 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 ACRP10323 421 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 ACTN1P12814 892 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 MARSP56192 900 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 MCCD1P59942 119 aaPredicted RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 ENPEPQ07075 957 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 ZBTB41Q5SVQ8 909 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 CDKAL1Q5VV42 579 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 C16orf59Q7L2K0 433 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 FRMD5Q7Z6J6 570 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 ECHDC2Q86YB7 292 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 CBWD2Q8IUF1 395 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 FAM186BQ8IYM0 893 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 BORCS6Q96GS4 357 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 MFSD14AQ96MC6 490 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 ACAP3Q96P50 834 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 HSD3B7Q9H2F3 369 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 NXF3Q9H4D5 531 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 ELAC1Q9H777 363 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 RPF1Q9H9Y2 349 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 METTL14Q9HCE5 456 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 SAMSN1Q9NSI8 373 aaKnown RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 RNF216Q9NWF9 866 aaPredicted RBP15.62■□□□□ 0.09
UPF1-211ENST00000600868 SNTG2Q9NY99 539 aa15.62■□□□□ 0.09
UPF1-211ENST00000600868 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 GOLGA6L19H0YKK7 550 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 ADRB2P07550 413 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 ZNF18P17022 549 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 ATF7P17544 494 aaPredicted RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 TNFSF9P41273 254 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 OSTNP61366 133 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 TPM4P67936 248 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 CYP24A1Q07973 514 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 ENOX2Q16206 610 aaKnown RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 SEZ6Q53EL9 994 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 PSRC1Q6PGN9 363 aaPredicted RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 INTS8Q75QN2 995 aaKnown RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 ZNF598Q86UK7 904 aaKnown RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 BRSK2Q8IWQ3 736 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 TMEM192Q8IY95 271 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RDH13Q8NBN7 331 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RNF214Q8ND24 703 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 PGBD4Q96DM1 585 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RBSNQ9H1K0 784 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RNF39Q9H2S5 420 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RBAKQ9NYW8 714 aaPredicted RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 ARMCX3Q9UH62 379 aaPredicted RBP15.61■□□□□ 0.09
UPF1-211ENST00000600868 HES2Q9Y543 173 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 MICAL3Q7RTP6 2002 aa15.61■□□□□ 0.09
UPF1-211ENST00000600868 RECQL4O94761 1208 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 IL18RAPO95256 599 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 FGBP02675 491 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 ITGA4P13612 1032 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 EEF1GP26641 437 aaKnown RBP15.6■□□□□ 0.09
UPF1-211ENST00000600868 YARSP54577 528 aaKnown RBP15.6■□□□□ 0.09
UPF1-211ENST00000600868 SPAG1Q07617 926 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 SURF1Q15526 300 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 SLC10A6Q3KNW5 377 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 CCDC40Q4G0X9 1142 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 TMEM240Q5SV17 173 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 CD302Q8IX05 232 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 CRIPAKQ8N1N5 446 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 TMC2Q8TDI7 906 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 CNOT6LQ96LI5 555 aaKnown RBP15.6■□□□□ 0.09
UPF1-211ENST00000600868 PLEKHA5Q9HAU0 1116 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 UBN1Q9NPG3 1134 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 TOPORSQ9NS56 1045 aaPredicted RBP15.6■□□□□ 0.09
UPF1-211ENST00000600868 TMEM161AQ9NX61 479 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 PCDH10Q9P2E7 1040 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 MAGEC2Q9UBF1 373 aaPredicted RBP15.6■□□□□ 0.09
UPF1-211ENST00000600868 GIT1Q9Y2X7 761 aa15.6■□□□□ 0.09
UPF1-211ENST00000600868 TTC26A0AVF1 554 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 KCNJ18B7U540 433 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 CXCL8P10145 99 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 KRT13P13646 458 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 AKAP5P24588 427 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 EPHB4P54760 987 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 KCNJ12Q14500 433 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 PSMD6Q15008 389 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 XKR4Q5GH76 650 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 TCP11X2Q5H9J9 407 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 ALKAL1Q6UXT8 129 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 AGMOQ6ZNB7 445 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 ZNF365Q70YC5 407 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 USP37Q86T82 979 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 TRIM59Q8IWR1 403 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 PARD3BQ8TEW8 1205 aa15.59■□□□□ 0.09
UPF1-211ENST00000600868 SNX27Q96L92 541 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms