RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 LRRC43Q8N309 656 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 PRPF31Q8WWY3 499 aaKnown RBP9.65□□□□□ -0.86
TRIM28-214ENST00000600840 AUTS2Q8WXX7 1259 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 DDX12PQ92771 950 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 ZNF558Q96NG5 402 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 TCF25Q9BQ70 676 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 PYM1Q9BRP8 204 aaKnown RBP9.65□□□□□ -0.86
TRIM28-214ENST00000600840 NTPCRQ9BSD7 190 aaKnown RBP9.65□□□□□ -0.86
TRIM28-214ENST00000600840 VN1R3Q9BXE9 311 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 TNMDQ9H2S6 317 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 NRDE2Q9H7Z3 1164 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 MAGEF1Q9HAY2 307 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 GPRC5CQ9NQ84 441 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 FAM105AQ9NUU6 356 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 SPG21Q9NZD8 308 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 KCND2Q9NZV8 630 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 DNAJB4Q9UDY4 337 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 PIN4Q9Y237 131 aaKnown RBP9.65□□□□□ -0.86
TRIM28-214ENST00000600840 LZTS1Q9Y250 596 aa9.65□□□□□ -0.86
TRIM28-214ENST00000600840 ARHGEF35A5YM69 484 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 GOLGA6L4A6NEF3 574 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 C2orf71A6NGG8 1288 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 HOXA2O43364 376 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 DDHD2O94830 711 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 GLRA2P23416 452 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 DNM2P50570 870 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 POU5F1BQ06416 359 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 LAMTOR4Q0VGL1 99 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 CUL4BQ13620 913 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 EMC2Q15006 297 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 TWF2Q6IBS0 349 aaKnown RBP9.64□□□□□ -0.87
TRIM28-214ENST00000600840 CATSPER4Q7RTX7 472 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ZNF410Q86VK4 478 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 GPBP1Q86WP2 473 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ZNF280BQ86YH2 543 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 KIAA2013Q8IYS2 634 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ABI1Q8IZP0 508 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ZNF710Q8N1W2 664 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ASAP3Q8TDY4 903 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 BSNDQ8WZ55 320 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 CDK5RAP3Q96JB5 506 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 REEP2Q9BRK0 252 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 TRAIPQ9BWF2 469 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 STRA6Q9BX79 667 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 ENTPD7Q9NQZ7 604 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 CHST12Q9NRB3 414 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 TBC1D13Q9NVG8 400 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 INPP5FQ9Y2H2 1132 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 COL4A3BPQ9Y5P4 624 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 RIF1Q5UIP0 2472 aaKnown RBP9.64□□□□□ -0.87
TRIM28-214ENST00000600840 MYO15AQ9UKN7 3530 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 CACNA1BQ00975 2339 aa9.64□□□□□ -0.87
TRIM28-214ENST00000600840 C2CD4DB7Z1M9 353 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 PI15O43692 258 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 GAS2O43903 313 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 USO1O60763 962 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 CLASP2O75122 1294 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ZNF623O75123 536 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 HIP1RO75146 1068 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ZC3H11AO75152 810 aaKnown RBP eCLIP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ASGR2P07307 311 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 GALTP07902 379 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 WEE2P0C1S8 567 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 SFPQP23246 707 aaKnown RBP eCLIP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 AFMP43652 599 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 SLC11A1P49279 550 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 POLGP54098 1239 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 CACNB1Q02641 598 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 DHX8Q14562 1220 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 TPRNQ4KMQ1 711 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 NT5DC1Q5TFE4 455 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 CWF19L1Q69YN2 538 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ASTLQ6HA08 431 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ANKRD54Q6NXT1 300 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 TMEM184AQ6ZMB5 413 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 RBM43Q6ZSC3 357 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 TMC7Q7Z402 723 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 IFNLR1Q8IU57 520 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 EXOC8Q8IYI6 725 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 MRPL43Q8N983 215 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 RNF149Q8NC42 400 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 CNNM3Q8NE01 707 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 MCPH1Q8NEM0 835 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 SLC7A3Q8WY07 619 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 TIPINQ9BVW5 301 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 EIF2AQ9BY44 585 aaKnown RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 GBP3Q9H0R5 595 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 BLZF1Q9H2G9 400 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 RNF39Q9H2S5 420 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 AGPAT5Q9NUQ2 364 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 RNF216Q9NWF9 866 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-214ENST00000600840 MIOSQ9NXC5 875 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 ODF2LQ9ULJ1 636 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 SORCS3Q9UPU3 1222 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 PCDHB2Q9Y5E7 798 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 HCFC2Q9Y5Z7 792 aa9.63□□□□□ -0.87
TRIM28-214ENST00000600840 PVALEFA0A1B0GWK0 134 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 SFI1A8K8P3 1242 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 ASAP2O43150 1006 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CXCL14O95715 111 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms