RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MCTP1Q6DN14 999 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 CYP26C1Q6V0L0 522 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 GLYCTKQ8IVS8 523 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 GPR65Q8IYL9 337 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 C4orf32Q8N8J7 132 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 IGSF22Q8N9C0 903 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 CMASQ8NFW8 434 aaPredicted RBP10.8□□□□□ -0.68
VRK3-216ENST00000599342 HASPINQ8TF76 798 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 RIN2Q8WYP3 895 aaPredicted RBP10.8□□□□□ -0.68
VRK3-216ENST00000599342 RABGGTAQ92696 567 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 STAMQ92783 540 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 B3GALT6Q96L58 329 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 KIFC3Q9BVG8 833 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 GPR62Q9BZJ7 368 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 CCDC113Q9H0I3 377 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 UPF2Q9HAU5 1272 aaKnown RBP10.8□□□□□ -0.68
VRK3-216ENST00000599342 RXFP1Q9HBX9 757 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 CHST7Q9NS84 486 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 DNM3Q9UQ16 869 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 GDAQ9Y2T3 454 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 PCDHB6Q9Y5E3 794 aa10.8□□□□□ -0.68
VRK3-216ENST00000599342 TTLL13PA6NNM8 815 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 CCDC169A6NNP5 214 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 EFEMP2O95967 443 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 MYBP10242 640 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 MRE11P49959 708 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 VCPP55072 806 aaKnown RBP10.79□□□□□ -0.68
VRK3-216ENST00000599342 ELAVL2Q12926 359 aaKnown RBP10.79□□□□□ -0.68
VRK3-216ENST00000599342 DMP1Q13316 513 aaPredicted RBP10.79□□□□□ -0.68
VRK3-216ENST00000599342 IER5LQ5T953 404 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 ATF7IP2Q5U623 682 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 DTHD1Q6ZMT9 781 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 CEP57Q86XR8 500 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PALB2Q86YC2 1186 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PRSS33Q8NF86 280 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 FEZF2Q8TBJ5 459 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 HDAC7Q8WUI4 952 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 SMG7Q92540 1137 aaKnown RBP10.79□□□□□ -0.68
VRK3-216ENST00000599342 DRC1Q96MC2 740 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PAAF1Q9BRP4 392 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 MFSD1Q9H3U5 465 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PLEKHA4Q9H4M7 779 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PIDD1Q9HB75 910 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 FNIP2Q9P278 1114 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 CACNG4Q9UBN1 327 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 CLUHO75153 1309 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 PHLPP2Q6ZVD8 1323 aa10.79□□□□□ -0.68
VRK3-216ENST00000599342 H3BQV1 296 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 K7ERI5 159 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 PTGESO14684 152 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 TGM5O43548 720 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 RFPL2O75678 378 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 KIF4AO95239 1232 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 C1RP00736 705 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 SPATA31D3P0C874 917 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 AVPR2P30518 371 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 GBP2P32456 591 aaPredicted RBP10.78□□□□□ -0.68
VRK3-216ENST00000599342 PRPHP41219 470 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 TOB1P50616 345 aaPredicted RBP10.78□□□□□ -0.68
VRK3-216ENST00000599342 YARSP54577 528 aaKnown RBP10.78□□□□□ -0.68
VRK3-216ENST00000599342 PEX3P56589 373 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 RILPL1Q5EBL4 403 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 FAM171A1Q5VUB5 890 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 EEF1DP3Q658K8 133 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 PDXDC1Q6P996 788 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 PRSS55Q6UWB4 352 aaPredicted RBP10.78□□□□□ -0.68
VRK3-216ENST00000599342 SPATA31D4Q6ZUB0 917 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 TTPALQ9BTX7 342 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 RHOBTB2Q9BYZ6 727 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 IRF2BPLQ9H1B7 796 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 SMOC2Q9H3U7 446 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 POLD4Q9HCU8 107 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 WDR6Q9NNW5 1121 aaKnown RBP10.78□□□□□ -0.68
VRK3-216ENST00000599342 ZDHHC7Q9NXF8 308 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 USP20Q9Y2K6 914 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 DENND4AQ7Z401 1863 aa10.78□□□□□ -0.68
VRK3-216ENST00000599342 PP2D1A8MPX8 630 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 E9PMD0 336 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 HIP1RO75146 1068 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 PDGFBP01127 241 aaPredicted RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 EDN1P05305 212 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 RPL17P18621 184 aaKnown RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 NPTX2P47972 431 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 NUBP1P53384 320 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 TDGQ13569 410 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 ZRSR1Q15695 479 aaKnown RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 PSMD5Q16401 504 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 ZNF568Q3ZCX4 644 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 GLRA4Q5JXX5 417 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 RTP2Q5QGT7 225 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 NT5DC1Q5TFE4 455 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 LIN9Q5TKA1 542 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 PIK3R5Q8WYR1 880 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 CDK5RAP3Q96JB5 506 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 TIPINQ9BVW5 301 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 CCDC94Q9BW85 323 aaPredicted RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 MRPL4Q9BYD3 311 aaKnown RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 C17orf75Q9HAS0 396 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 KCNK12Q9HB15 430 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 KMT5AQ9NQR1 393 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms