RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SV2BQ7L1I2 683 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 MAP4K3Q8IVH8 894 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 EFHBQ8N7U6 833 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 TCF25Q9BQ70 676 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 STRA6Q9BX79 667 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 GBP3Q9H0R5 595 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 CXCL16Q9H2A7 254 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 TNMDQ9H2S6 317 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 OLFML3Q9NRN5 406 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 KBTBD4Q9NVX7 518 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 STK39Q9UEW8 545 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 PARP2Q9UGN5 583 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 PLXNA3P51805 1871 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 FSD2A1L4K1 749 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 K7ENM7 598 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 TBX10O75333 385 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 GLP2RO95838 553 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 GTF2F1P35269 517 aaKnown RBP eCLIP17.69■□□□□ 0.42
TRIM28-213ENST00000598355 MCL1Q07820 350 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 NOLC1Q14978 699 aaKnown RBP eCLIP17.69■□□□□ 0.42
TRIM28-213ENST00000598355 DUSP6Q16828 381 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 LEXMQ3ZCV2 418 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 CNNM4Q6P4Q7 775 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 SFR1Q86XK3 245 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 FAM178BQ8IXR5 827 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 MYCT1Q8N699 235 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 PDILTQ8N807 584 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 RPS6KC1Q96S38 1066 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 CDCA3Q99618 268 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-213ENST00000598355 HAPLN2Q9GZV7 340 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 KLK14Q9P0G3 267 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 TBX20Q9UMR3 447 aa17.69■□□□□ 0.42
TRIM28-213ENST00000598355 MTCL1Q9Y4B5 1905 aaKnown RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 MEFVO15553 781 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 FAM189A1O60320 539 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 CSPG5O95196 566 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 KRT18P05783 430 aaKnown RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 CTSAP10619 480 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 BMP1P13497 986 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 KCNQ1P51787 676 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 ADAM15Q13444 863 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 TUSC3Q13454 348 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 PLPP4Q5VZY2 271 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 ALKAL1Q6UXT8 129 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 DYMQ7RTS9 669 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 LEO1Q8WVC0 666 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 HVCN1Q96D96 273 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 ZBTB45Q96K62 511 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 SNX27Q96L92 541 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 FAM193BQ96PV7 902 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 PPP1R10Q96QC0 940 aaKnown RBP17.68■□□□□ 0.42
TRIM28-213ENST00000598355 MAGEF1Q9HAY2 307 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 FAN1Q9Y2M0 1017 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 C5orf42Q9H799 3197 aa17.68■□□□□ 0.42
TRIM28-213ENST00000598355 C2orf71A6NGG8 1288 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 HIDE1A8MVS5 230 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 LINC01565O15544 149 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 ALDH2P05091 517 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 GAP43P17677 238 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 NMT1P30419 496 aaKnown RBP17.67■□□□□ 0.42
TRIM28-213ENST00000598355 ME1P48163 572 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 NRIP1P48552 1158 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 KRT85P78386 507 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 SMC1AQ14683 1233 aaKnown RBP17.67■□□□□ 0.42
TRIM28-213ENST00000598355 SLC39A4Q6P5W5 647 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 ZNF720Q7Z2F6 126 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 VPS52Q8N1B4 723 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 MRPL43Q8N983 215 aaKnown RBP17.67■□□□□ 0.42
TRIM28-213ENST00000598355 VN1R2Q8NFZ6 395 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 CHAMP1Q96JM3 812 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 MSLNLQ96KJ4 702 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 HERC2P3Q9BVR0 1158 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 CCDC94Q9BW85 323 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-213ENST00000598355 COL25A1Q9BXS0 654 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-213ENST00000598355 TRIM9Q9C026 710 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 ENTPD7Q9NQZ7 604 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 CLDND1Q9NY35 253 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 GDAQ9Y2T3 454 aa17.67■□□□□ 0.42
TRIM28-213ENST00000598355 F8W810 466 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 THP07101 528 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 KCNA5P22460 613 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 DLX2Q07687 328 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-213ENST00000598355 TMEM184AQ6ZMB5 413 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 TMC7Q7Z402 723 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 IQUBQ8NA54 791 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-213ENST00000598355 PANK2Q9BZ23 570 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 TLE6Q9H808 572 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 TOPORSQ9NS56 1045 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-213ENST00000598355 CNTN3Q9P232 1028 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 ANKFY1Q9P2R3 1169 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 PRG3Q9Y2Y8 225 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-213ENST00000598355 ATP6V1DQ9Y5K8 247 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 STYXL1Q9Y6J8 313 aa17.66■□□□□ 0.42
TRIM28-213ENST00000598355 DENND4AQ7Z401 1863 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 BDP1A6H8Y1 2624 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 FAM237AA0A1B0GTK4 181 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 TMEM189-UBE2V1I3L0A0 370 aa17.65■□□□□ 0.42
TRIM28-213ENST00000598355 HNRNPDLO14979 420 aaKnown RBP17.65■□□□□ 0.42
TRIM28-213ENST00000598355 CLDN3O15551 220 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms