RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SRGAP2CP0DJJ0 459 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 PRLRP16471 622 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 CXCR5P32302 372 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 LACTBP83111 547 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 LAMTOR4Q0VGL1 99 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 GPR142Q7Z601 462 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 HELQQ8TDG4 1101 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 ZNF296Q8WUU4 475 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 KATNBL1Q9H079 304 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 RNPEPQ9H4A4 650 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 KIAA1586Q9HCI6 787 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 RAB20Q9NX57 234 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 TRPC6Q9Y210 931 aa18.42■□□□□ 0.54
SHKBP1-216ENST00000598201 A0A0B4J269 797 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 TMCO5BA8MYB1 307 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 STRNO43815 780 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 FKTNO75072 461 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 SNAI1O95863 264 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 GJB1P08034 283 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 H2AFZP0C0S5 128 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 CCDC172P0C7W6 258 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 PSMD6Q15008 389 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 C15orf39Q6ZRI6 1047 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 H2AFVQ71UI9 128 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 USP37Q86T82 979 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 ABRAQ8N0Z2 381 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 CCDC113Q9H0I3 377 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 PDE11AQ9HCR9 933 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 TAS2R14Q9NYV8 317 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 HYOU1Q9Y4L1 999 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 IVNS1ABPQ9Y6Y0 642 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 PTPRJQ12913 1337 aa18.41■□□□□ 0.54
SHKBP1-216ENST00000598201 RHOXF2BP0C7M4 288 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 MAPK4P31152 587 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 GALCP54803 685 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 CLDN10P78369 228 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 ENPEPQ07075 957 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 PRPF4BQ13523 1007 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 SLFN12LQ6IEE8 588 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 FMNL3Q8IVF7 1028 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 TATDN2Q93075 761 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 PNKPQ96T60 521 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 AGPAT1Q99943 283 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 RHOXF2Q9BQY4 288 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 PI4K2AQ9BTU6 479 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 MSTO1Q9BUK6 570 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 VTA1Q9NP79 307 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 ACP6Q9NPH0 428 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 ATP8B3O60423 1300 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 MSCO60682 206 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 TNFAIP3P21580 790 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 USP8P40818 1118 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 ADCYAP1R1P41586 468 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 SLC26A2P50443 739 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 SEZ6Q53EL9 994 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 CDCA2Q69YH5 1023 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 FAM71AQ8IYT1 594 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 RNF149Q8NC42 400 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 MSANTD4Q8NCY6 345 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 TCP11Q8WWU5 503 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 SHC3Q92529 594 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 ZNF668Q96K58 619 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 GOLPH3Q9H4A6 298 aa18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 PACSIN2Q9UNF0 486 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-216ENST00000598201 RBM47A0AV96 593 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 KIAA0391O15091 583 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 SGPL1O95470 568 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 MATR3P43243 847 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 PSMC4P43686 418 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 CKAP4Q07065 602 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 LAMC2Q13753 1193 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 GRB14Q14449 540 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 CAGE1Q8TC20 777 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 VTI1AQ96AJ9 217 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 NT5C1BQ96P26 610 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 SEPT11Q9NVA2 429 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 SMARCAL1Q9NZC9 954 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 EHD2Q9NZN4 543 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 SUCLA2Q9P2R7 463 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 INTUQ9ULD6 942 aa18.39■□□□□ 0.53
SHKBP1-216ENST00000598201 CYP26A1O43174 497 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 GAS2O43903 313 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 HBP1O60381 514 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 LGALS2P05162 132 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 HARSP12081 509 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TCP1P17987 556 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 CTGFP29279 349 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 NOP2P46087 812 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 EFNA5P52803 228 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 MFAP3P55082 362 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 MXD4Q14582 209 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 MEI1Q5TIA1 1274 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ZNF467Q7Z7K2 595 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 DPP9Q86TI2 863 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 RHPN2Q8IUC4 686 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 LRRC57Q8N9N7 239 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 CD99L2Q8TCZ2 262 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 AFG1LQ8WV93 481 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms