RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SRPRBQ9Y5M8 271 aaKnown RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 CITO14578 2027 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 NPHP3-ACAD11A0A0J9YXS1 232 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 NRP1O14786 923 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 SLC16A4O15374 487 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 CTSAP10619 480 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 NASPP49321 788 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 RBM10P98175 930 aaKnown RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 FOXK2Q01167 660 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 CACNB1Q02641 598 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 BMS1Q14692 1282 aaKnown RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 ARSHQ5FYA8 562 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 SPECC1Q5M775 1068 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 USP49Q70CQ1 688 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 APBB1IPQ7Z5R6 666 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 MRPL43Q8N983 215 aaKnown RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 LARP4BQ92615 738 aaKnown RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 EPSTI1Q96J88 318 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 REEP2Q9BRK0 252 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 NTPCRQ9BSD7 190 aaKnown RBP16.6■□□□□ 0.25
TRIM28-205ENST00000595028 STK39Q9UEW8 545 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 MUTYHQ9UIF7 546 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 ODF2LQ9ULJ1 636 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 FAN1Q9Y2M0 1017 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 IRAK3Q9Y616 596 aa16.6■□□□□ 0.25
TRIM28-205ENST00000595028 MBTPS2O43462 519 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 ALDH2P05091 517 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 SRGAP2BP0DMP2 458 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 CA8P35219 290 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 OR1G1P47890 313 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 SMTNP53814 917 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 COASYQ13057 564 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 KCNC3Q14003 757 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 DHX8Q14562 1220 aaKnown RBP16.59■□□□□ 0.25
TRIM28-205ENST00000595028 MCM6Q14566 821 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 SLC39A14Q15043 492 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 PTPN14Q15678 1187 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 ZNF568Q3ZCX4 644 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 HERC4Q5GLZ8 1057 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-205ENST00000595028 SMRP1Q8NCR6 262 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 TMEM161BQ8NDZ6 487 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 AUTS2Q8WXX7 1259 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 CLIC6Q96NY7 704 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 ACO2Q99798 780 aaKnown RBP16.59■□□□□ 0.25
TRIM28-205ENST00000595028 TARS2Q9BW92 718 aaKnown RBP16.59■□□□□ 0.25
TRIM28-205ENST00000595028 CDT1Q9H211 546 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 PTPRHQ9HD43 1115 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 KCNG1Q9UIX4 513 aa16.59■□□□□ 0.25
TRIM28-205ENST00000595028 PDCD11Q14690 1871 aaKnown RBP16.59■□□□□ 0.25
TRIM28-205ENST00000595028 CACNA1HO95180 2353 aa16.58■□□□□ 0.25
TRIM28-205ENST00000595028 PTGESO14684 152 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 NR1I2O75469 434 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 MAPTP10636 758 aaKnown RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 PDIA4P13667 645 aaKnown RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 TXLNAP40222 546 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 ZNF131P52739 623 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 NCKAP1LP55160 1127 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 TCF15Q12870 199 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 GIT2Q14161 759 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 SMAD2Q15796 467 aaKnown RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 TMEM184AQ6ZMB5 413 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 RNF168Q8IYW5 571 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 KRI1Q8N9T8 703 aaKnown RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 HERC2P3Q9BVR0 1158 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 LARSQ9P2J5 1176 aaKnown RBP16.58■□□□□ 0.24
TRIM28-205ENST00000595028 STK17AQ9UEE5 414 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 CCDC39Q9UFE4 941 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 GDAQ9Y2T3 454 aa16.58■□□□□ 0.24
TRIM28-205ENST00000595028 DMDP11532 3685 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 F8W810 466 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 H0YCG3 227 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 ABLIM1O14639 778 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 GFRA3O60609 400 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 CLASP2O75122 1294 aaKnown RBP16.57■□□□□ 0.24
TRIM28-205ENST00000595028 FAM13AO94988 1023 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 CXCL14O95715 111 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 EFEMP2O95967 443 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 SOD2P04179 222 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 KRT18P05783 430 aaKnown RBP16.57■□□□□ 0.24
TRIM28-205ENST00000595028 ZSCAN22P10073 491 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-205ENST00000595028 PROZP22891 400 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 STRN3Q13033 797 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 TUSC3Q13454 348 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 STK38Q15208 465 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 LLGL2Q6P1M3 1020 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 CEP120Q8N960 986 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 LINC00301Q8NCQ3 95 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 KCNN1Q92952 543 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 ZNF396Q96N95 335 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-205ENST00000595028 PARVGQ9HBI0 331 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 HCFC2Q9Y5Z7 792 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 DCHS1Q96JQ0 3298 aa16.57■□□□□ 0.24
TRIM28-205ENST00000595028 TBCAO75347 108 aaKnown RBP16.56■□□□□ 0.24
TRIM28-205ENST00000595028 BRD1O95696 1058 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 F13A1P00488 732 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 URODP06132 367 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 MCF2P10911 925 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 GRM5P41594 1212 aa16.56■□□□□ 0.24
TRIM28-205ENST00000595028 NAB2Q15742 525 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms