RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	GFRA3	O60609	400 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	RECQL4	O94761	1208 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	KIF4A	O95239	1232 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	CFH	P08603	1231 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	PRPF4B	Q13523	1007 aa	Known RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	GNL2	Q13823	731 aa	Known RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	ECM1	Q16610	540 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	RTP2	Q5QGT7	225 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	TTC38	Q5R3I4	469 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	EEF1DP3	Q658K8	133 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	CWF19L1	Q69YN2	538 aa	Known RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	ELMSAN1	Q6PJG2	1045 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	PPP4R3CP	Q6ZMV5	832 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	GET4	Q7L5D6	327 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	SIX5	Q8N196	739 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	CMAS	Q8NFW8	434 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	ERMN	Q8TAM6	284 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	ZNF707	Q96C28	371 aa	Predicted RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	FZD8	Q9H461	694 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	WDR6	Q9NNW5	1121 aa	Known RBP	12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	DUSP12	Q9UNI6	340 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	LIMCH1	Q9UPQ0	1083 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	GDA	Q9Y2T3	454 aa		12.85	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	PTGES	O14684	152 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	PI15	O43692	258 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	CYP11B2	P19099	503 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	RPA1	P27694	616 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	CCT6A	P40227	531 aa	Known RBP	12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	TUSC3	Q13454	348 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	MAPK6	Q16659	721 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	FAM187B	Q17R55	369 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	FAM171A1	Q5VUB5	890 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	PRIMPOL	Q96LW4	560 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	NT5C3A	Q9H0P0	336 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	C2orf40	Q9H1Z8	148 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	DPP7	Q9UHL4	492 aa		12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
CDK5RAP3-223	ENST00000582114	STK25	O00506	426 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	TH	P07101	528 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NPR3	P17342	541 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	IGFBP6	P24592	240 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NAMPT	P43490	491 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	GLRA4	Q5JXX5	417 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	FAM184A	Q8NB25	1140 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	STAM	Q92783	540 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ADPGK	Q9BRR6	497 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	TTPAL	Q9BTX7	342 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CCDC113	Q9H0I3	377 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	BHMT2	Q9H2M3	363 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	FOXP1	Q9H334	677 aa	Predicted RBP	12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	PLEKHA4	Q9H4M7	779 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	FNIP2	Q9P278	1114 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CA14	Q9ULX7	337 aa		12.83	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ACKR2	O00590	384 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ADAM12	O43184	909 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	RFX1	P22670	979 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	RBM25	P49756	843 aa	Known RBP	12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CLCN5	P51795	746 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NTHL1	P78549	312 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	PSMD5	Q16401	504 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NT5DC1	Q5TFE4	455 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	HAUS3	Q68CZ6	603 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	LILRA6	Q6PI73	481 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	FBXO18	Q8NFZ0	1043 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	IFT74	Q96LB3	600 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CLSTN3	Q9BQT9	956 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	LLPH	Q9BRT6	129 aa	Known RBP	12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	PRKD2	Q9BZL6	878 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	IRF2BPL	Q9H1B7	796 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	DDX19A	Q9NUU7	478 aa	Known RBP	12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	IGSF9	Q9P2J2	1179 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	EPS15L1	Q9UBC2	864 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	KIAA1024	Q9UPX6	916 aa		12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.82	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ZMYM2	Q9UBW7	1377 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CACNA1H	O95180	2353 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	DMD	P11532	3685 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	KRBA1	A5PL33	1030 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CCDC169	A6NNP5	214 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	PP2D1	A8MPX8	630 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CCL16	O15467	120 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ST18	O60284	1047 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ZMYND10	O75800	440 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	AOC1	P19801	751 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NUBP1	P53384	320 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	OSTN	P61366	133 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CREM	Q03060	361 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	PPP2R5A	Q15172	486 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	NAB2	Q15742	525 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ATF7IP2	Q5U623	682 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	CYP26C1	Q6V0L0	522 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	ASCL5	Q7RTU5	278 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	GRASP	Q7Z6J2	395 aa	Predicted RBP	12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	FRMD5	Q7Z6J6	570 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	SLC44A3	Q8N4M1	653 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	C4orf32	Q8N8J7	132 aa		12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	LNX1	Q8TBB1	728 aa	Predicted RBP	12.81	□□□□□ -0.36
CDK5RAP3-223	ENST00000582114	SNX29	Q8TEQ0	813 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms