RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 PALB2Q86YC2 1186 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 SLC44A3Q8N4M1 653 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 MCPH1Q8NEM0 835 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 SMG7Q92540 1137 aaKnown RBP11.74□□□□□ -0.53
RFFL-209ENST00000581265 B3GALT6Q96L58 329 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 NACC1Q96RE7 527 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 TMEM60Q9H2L4 133 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 TUFT1Q9NNX1 390 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 GPRC5CQ9NQ84 441 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 PRMT7Q9NVM4 692 aaPredicted RBP11.74□□□□□ -0.53
RFFL-209ENST00000581265 ZDHHC7Q9NXF8 308 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.74□□□□□ -0.53
RFFL-209ENST00000581265 KLK14Q9P0G3 267 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 DAXXQ9UER7 740 aaPredicted RBP11.74□□□□□ -0.53
RFFL-209ENST00000581265 PARP2Q9UGN5 583 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 R4GN57 208 aa11.74□□□□□ -0.53
RFFL-209ENST00000581265 POTEMA6NI47 508 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 LRRIQ4A6NIV6 560 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 PI15O43692 258 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 JAK2O60674 1132 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 USO1O60763 962 aaKnown RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 CLUHO75153 1309 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 TADA2AO75478 443 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 ATP2B1P20020 1258 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 SDHBP21912 280 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 GBP2P32456 591 aaPredicted RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 NEK4P51957 841 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 CREMQ03060 361 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 TUSC3Q13454 348 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 C2orf16Q68DN1 1984 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 CDCA2Q69YH5 1023 aaPredicted RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 ZC3H14Q6PJT7 736 aaKnown RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 MAEAQ7L5Y9 396 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 RIN2Q8WYP3 895 aaPredicted RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 RUBCNQ92622 972 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 MYADMQ96S97 322 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 POLR3CQ9BUI4 534 aaPredicted RBP11.73□□□□□ -0.53
RFFL-209ENST00000581265 PRKD2Q9BZL6 878 aa11.73□□□□□ -0.53
RFFL-209ENST00000581265 ARID2Q68CP9 1835 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 SF3B1O75533 1304 aaKnown RBP eCLIP11.72□□□□□ -0.535e-6■■■■■ 88.1
RFFL-209ENST00000581265 TTLL13PA6NNM8 815 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 NARSO43776 548 aaKnown RBP11.72□□□□□ -0.53
RFFL-209ENST00000581265 MED24O75448 989 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 ZMYND10O75800 440 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 MYBP10242 640 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 LAMP2P13473 410 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 CYP11B2P19099 503 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 RPA1P27694 616 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 MCM7P33993 719 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 HSP90AA2PQ14568 343 aaPredicted RBP11.72□□□□□ -0.53
RFFL-209ENST00000581265 POTEGQ6S5H5 508 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 ZBTB8OSQ8IWT0 167 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 SIX5Q8N196 739 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 RSAD2Q8WXG1 361 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 RABGGTAQ92696 567 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 PAAF1Q9BRP4 392 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 C2orf40Q9H1Z8 148 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 PIDD1Q9HB75 910 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 DLL3Q9NYJ7 618 aa11.72□□□□□ -0.53
RFFL-209ENST00000581265 TDRD15B5MCY1 1934 aaKnown RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 ANHXE9PGG2 379 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 ACKR2O00590 384 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 PTGESO14684 152 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 N4BP3O15049 544 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 EIF5BO60841 1220 aaKnown RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 THP07101 528 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 SRFP11831 508 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 RPL17P18621 184 aaKnown RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 MUTP22033 750 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 NAMPTP43490 491 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 ORC2Q13416 577 aaPredicted RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 PRPF4BQ13523 1007 aaKnown RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 SAFBQ15424 915 aaKnown RBP eCLIP11.71□□□□□ -0.53
RFFL-209ENST00000581265 NAB2Q15742 525 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 MAPK6Q16659 721 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 RTP2Q5QGT7 225 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 FAM171A1Q5VUB5 890 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 PADI6Q6TGC4 694 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 ERMNQ8TAM6 284 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 LNX1Q8TBB1 728 aaPredicted RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 PIK3R5Q8WYR1 880 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 BSNDQ8WZ55 320 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 CLSTN3Q9BQT9 956 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 TTPALQ9BTX7 342 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 CCDC113Q9H0I3 377 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 PDZD7Q9H5P4 517 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 SNTG2Q9NY99 539 aa11.71□□□□□ -0.53
RFFL-209ENST00000581265 ZFP37Q9Y6Q3 630 aaPredicted RBP11.71□□□□□ -0.53
RFFL-209ENST00000581265 GVINP1Q7Z2Y8 2422 aa11.71□□□□□ -0.54
RFFL-209ENST00000581265 DOCK8Q8NF50 2099 aa11.71□□□□□ -0.54
RFFL-209ENST00000581265 EP300Q09472 2414 aaPredicted RBP11.7□□□□□ -0.54
RFFL-209ENST00000581265 MTCL1Q9Y4B5 1905 aaKnown RBP11.7□□□□□ -0.54
RFFL-209ENST00000581265 KRBA1A5PL33 1030 aa11.7□□□□□ -0.54
RFFL-209ENST00000581265 CFHP08603 1231 aa11.7□□□□□ -0.54
RFFL-209ENST00000581265 HNRNPA1P09651 372 aaKnown RBP eCLIP11.7□□□□□ -0.54
RFFL-209ENST00000581265 FOSBP53539 338 aa11.7□□□□□ -0.54
RFFL-209ENST00000581265 ST3GAL1Q11201 340 aa11.7□□□□□ -0.54
RFFL-209ENST00000581265 ELAVL2Q12926 359 aaKnown RBP11.7□□□□□ -0.54
RFFL-209ENST00000581265 PPP2R5AQ15172 486 aa11.7□□□□□ -0.54
RFFL-209ENST00000581265 PRSS55Q6UWB4 352 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms