RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DNAJC25Q9H1X3 360 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 TOPORSQ9NS56 1045 aaPredicted RBP16.93■□□□□ 0.3
SS18-216ENST00000580751 GIT1Q9Y2X7 761 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 GBF1Q92538 1859 aa16.93■□□□□ 0.3
SS18-216ENST00000580751 TBKBP1A7MCY6 615 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 ANKRD63C9JTQ0 380 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 PSMA7O14818 248 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 GARTP22102 1010 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 DNAJB2P25686 324 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 HOXD13P35453 343 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 MRE11P49959 708 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 YARSP54577 528 aaKnown RBP16.92■□□□□ 0.3
SS18-216ENST00000580751 BTG3Q14201 252 aaPredicted RBP16.92■□□□□ 0.3
SS18-216ENST00000580751 HABP4Q5JVS0 413 aaKnown RBP16.92■□□□□ 0.3
SS18-216ENST00000580751 NELFCDQ8IXH7 590 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 ADSSL1Q8N142 457 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 LRRC43Q8N309 656 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 ENOX1Q8TC92 643 aaKnown RBP16.92■□□□□ 0.3
SS18-216ENST00000580751 URGCPQ8TCY9 931 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 HELQQ8TDG4 1101 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 POMGNT1Q8WZA1 660 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 RNF39Q9H2S5 420 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 RNF19AQ9NV58 838 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 SNTG2Q9NY99 539 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 CGNQ9P2M7 1197 aaKnown RBP16.92■□□□□ 0.3
SS18-216ENST00000580751 PARP2Q9UGN5 583 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 GDAQ9Y2T3 454 aa16.92■□□□□ 0.3
SS18-216ENST00000580751 MEIS3P2A8K0S8 358 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 PPP1R3GB7ZBB8 358 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 TISP43B9A030 160 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 KIAA0391O15091 583 aaKnown RBP16.91■□□□□ 0.3
SS18-216ENST00000580751 OGTO15294 1046 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 INPPL1O15357 1258 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 RECQL4O94761 1208 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 CA3P07451 260 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 AKAP5P24588 427 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 PBX2P40425 430 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 MLH1P40692 756 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 GATMP50440 423 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 NOMO2Q5JPE7 1267 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 ARMCX5Q6P1M9 558 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 THNSL1Q8IYQ7 743 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 FIBCD1Q8N539 461 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 CEP120Q8N960 986 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 TIFAQ96CG3 184 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 ACAP3Q96P50 834 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 CASD1Q96PB1 797 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 IKZF4Q9H2S9 585 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 SLC28A3Q9HAS3 691 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 KANSL3Q9P2N6 904 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 RWDD2AQ9UIY3 292 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 AGO2Q9UKV8 859 aaKnown RBP16.91■□□□□ 0.3
SS18-216ENST00000580751 INPP5FQ9Y2H2 1132 aa16.91■□□□□ 0.3
SS18-216ENST00000580751 YBX2Q9Y2T7 364 aaKnown RBP16.91■□□□□ 0.3
SS18-216ENST00000580751 FNDC1Q4ZHG4 1894 aaPredicted RBP16.9■□□□□ 0.3
SS18-216ENST00000580751 CHD9Q3L8U1 2897 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 BICDL2A1A5D9 508 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 LCHNA4D1U4 455 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 ARL5CA6NH57 179 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 BECN2A8MW95 431 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 OFD1O75665 1012 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 CLTAP09496 248 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 MYOGP15173 224 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 ADSSP30520 456 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 OSTNP61366 133 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 TPM4P67936 248 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 MYL5Q02045 173 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 HSP90AA2PQ14568 343 aaPredicted RBP16.9■□□□□ 0.3
SS18-216ENST00000580751 IQCB1Q15051 598 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 PAN2Q504Q3 1202 aaKnown RBP16.9■□□□□ 0.3
SS18-216ENST00000580751 PPP2R2DQ66LE6 453 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 RPS6KC1Q96S38 1066 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 GAD1Q99259 594 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 HAPLN2Q9GZV7 340 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 RBSNQ9H1K0 784 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 CBX8Q9HC52 389 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 AGPAT3Q9NRZ7 376 aa16.9■□□□□ 0.3
SS18-216ENST00000580751 TYW1Q9NV66 732 aaKnown RBP16.9■□□□□ 0.3
SS18-216ENST00000580751 TMEM265A0A087WTH1 108 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 LINC01553A4QN01 128 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 GOLGA6L19H0YKK7 550 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 PDXKO00764 312 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 TGFB1I1O43294 461 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 FAM189A1O60320 539 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 LDHAP00338 332 aaKnown RBP16.89■□□□□ 0.29
SS18-216ENST00000580751 PRCPP42785 496 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 PAK1Q13153 545 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 ISM2Q6H9L7 571 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 C11orf57Q6ZUT1 292 aaPredicted RBP16.89■□□□□ 0.29
SS18-216ENST00000580751 C12orf56Q8IXR9 622 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 SMYD4Q8IYR2 804 aaPredicted RBP16.89■□□□□ 0.29
SS18-216ENST00000580751 ZFP42Q96MM3 310 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 CBWD1Q9BRT8 395 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 NKX2-4Q9H2Z4 354 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 MAPK8IP1Q9UQF2 711 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 RWDD3Q9Y3V2 267 aa16.89■□□□□ 0.29
SS18-216ENST00000580751 CARNS1A5YM72 827 aa16.88■□□□□ 0.29
SS18-216ENST00000580751 SOX1O00570 391 aaPredicted RBP16.88■□□□□ 0.29
SS18-216ENST00000580751 POU5F1Q01860 360 aaKnown RBP16.88■□□□□ 0.29
SS18-216ENST00000580751 RNASELQ05823 741 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms