RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DCAF17Q5H9S7 520 aaPredicted RBP16.59■□□□□ 0.25
SS18-215ENST00000580642 TCERG1LQ5VWI1 586 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 EEF1DP3Q658K8 133 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 NECAB2Q7Z6G3 386 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 FAM228AQ86W67 206 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 RDH13Q8NBN7 331 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 FNBP1Q96RU3 617 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 PPP1R16BQ96T49 567 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 CCDC94Q9BW85 323 aaPredicted RBP16.59■□□□□ 0.25
SS18-215ENST00000580642 ASB7Q9H672 318 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 C11orf49Q9H6J7 331 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 USP20Q9Y2K6 914 aa16.59■□□□□ 0.25
SS18-215ENST00000580642 NOC2LQ9Y3T9 749 aaKnown RBP16.59■□□□□ 0.25
SS18-215ENST00000580642 GOLGA8IPA6NC78 632 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 GOLGA8JA6NMD2 632 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 SKIP12755 728 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 DEKP35659 375 aaKnown RBP16.58■□□□□ 0.24
SS18-215ENST00000580642 FMO5P49326 533 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 HS1BP3Q53T59 392 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 GBP6Q6ZN66 633 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 WDR49Q8IV35 697 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 HACE1Q8IYU2 909 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 MCOLN1Q9GZU1 580 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 RPF1Q9H9Y2 349 aaKnown RBP16.58■□□□□ 0.24
SS18-215ENST00000580642 TMEM8AQ9HCN3 771 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 ERVK-5Q9HDB9 667 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 PLCB1Q9NQ66 1216 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 ST3GAL5Q9UNP4 418 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 PIN4Q9Y237 131 aaKnown RBP16.58■□□□□ 0.24
SS18-215ENST00000580642 COQ4Q9Y3A0 265 aa16.58■□□□□ 0.24
SS18-215ENST00000580642 CSDE1O75534 798 aaKnown RBP16.57■□□□□ 0.24
SS18-215ENST00000580642 STAG3L1P0CL83 205 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 ZSCAN20P17040 1043 aaPredicted RBP16.57■□□□□ 0.24
SS18-215ENST00000580642 RFX1P22670 979 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 ACOT2P49753 483 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 RAB27AP51159 221 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 PAK2Q13177 524 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 TBX2Q13207 712 aaPredicted RBP16.57■□□□□ 0.24
SS18-215ENST00000580642 LPIN1Q14693 890 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 SYCP1Q15431 976 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 EXOC3L4Q17RC7 722 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 ZNF618Q5T7W0 954 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 KRT39Q6A163 491 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 TRAF7Q6Q0C0 670 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 LRRC8DQ7L1W4 858 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 ZBTB33Q86T24 672 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 FAM81BQ96LP2 452 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 ACAP3Q96P50 834 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 CGRRF1Q99675 332 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 FTHL17Q9BXU8 183 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 TRIM6Q9C030 488 aaPredicted RBP16.57■□□□□ 0.24
SS18-215ENST00000580642 TOPORSQ9NS56 1045 aaPredicted RBP16.57■□□□□ 0.24
SS18-215ENST00000580642 FBXL5Q9UKA1 691 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 SIK3Q9Y2K2 1263 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 DERAQ9Y315 318 aa16.57■□□□□ 0.24
SS18-215ENST00000580642 A0A1W2PQJ5 194 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 ZNF623O75123 536 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 CTSHP09668 335 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 MXI1P50539 228 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 C1orf220Q5T0J3 134 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 TMC6Q7Z403 805 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 PPFIBP1Q86W92 1011 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 CCDC150Q8NCX0 1101 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 CPB2Q96IY4 423 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 NUCKS1Q9H1E3 243 aaKnown RBP16.56■□□□□ 0.24
SS18-215ENST00000580642 PADI3Q9ULW8 664 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 C2CD2Q9Y426 696 aa16.56■□□□□ 0.24
SS18-215ENST00000580642 TRIP12Q14669 1992 aaPredicted RBP16.56■□□□□ 0.24
SS18-215ENST00000580642 LRRIQ3A6PVS8 624 aaPredicted RBP16.55■□□□□ 0.24
SS18-215ENST00000580642 ZC3H11AO75152 810 aaKnown RBP eCLIP16.55■□□□□ 0.24
SS18-215ENST00000580642 FGFR4P22455 802 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 YARSP54577 528 aaKnown RBP16.55■□□□□ 0.24
SS18-215ENST00000580642 MYL7Q01449 175 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 ENOX2Q16206 610 aaKnown RBP16.55■□□□□ 0.24
SS18-215ENST00000580642 DUOXA2Q1HG44 320 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 UBXN11Q5T124 520 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 C15orf39Q6ZRI6 1047 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 CNGA4Q8IV77 575 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 FMNL3Q8IVF7 1028 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 THNSL1Q8IYQ7 743 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 ZSWIM2Q8NEG5 633 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 PLEKHO2Q8TD55 490 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 CACTINQ8WUQ7 758 aaKnown RBP16.55■□□□□ 0.24
SS18-215ENST00000580642 APBB2Q92870 758 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 CCDC127Q96BQ5 260 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 FAXDC2Q96IV6 333 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 UBN1Q9NPG3 1134 aa16.55■□□□□ 0.24
SS18-215ENST00000580642 RNF216Q9NWF9 866 aaPredicted RBP16.55■□□□□ 0.24
SS18-215ENST00000580642 TTC26A0AVF1 554 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 PQBP1O60828 265 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 NPTXRO95502 500 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 PTMAP06454 111 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 TRIM49P0CI25 452 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 TRIM49CP0CI26 452 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 HARSP12081 509 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 TNNI1P19237 187 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 TRIM21P19474 475 aaKnown RBP16.54■□□□□ 0.24
SS18-215ENST00000580642 RFC2P35250 354 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 DLG4P78352 724 aa16.54■□□□□ 0.24
SS18-215ENST00000580642 TLE2Q04725 743 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms