RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DNAJC21Q5F1R6 531 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 PRAMEF18Q5VWM3 479 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 KDM7AQ6ZMT4 941 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 TAS1R3Q7RTX0 852 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 KRT35Q92764 455 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ATP6V1G3Q96LB4 118 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ZSWIM1Q9BR11 485 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 MAF1Q9H063 256 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 RAB17Q9H0T7 212 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ATP6V0A4Q9HBG4 840 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ARHGAP28Q9P2N2 729 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 CHORDC1Q9UHD1 332 aaPredicted RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 SEPT9Q9UHD8 586 aaPredicted RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 COL11A1P12107 1806 aaPredicted RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 PHIPQ8WWQ0 1821 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 BRCA1P38398 1863 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 HMGB1P1B2RPK0 211 aaPredicted RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 HSPA6P17066 643 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 MARCKSL1P49006 195 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 PDE6CP51160 858 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 DR1Q01658 176 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 SP4Q02446 784 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 MTMR3Q13615 1198 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 DHX34Q14147 1143 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 MESDQ14696 234 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 GNPTABQ3T906 1256 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 CEP85LQ5SZL2 805 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 ANGEL2Q5VTE6 544 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 SRLQ86TD4 932 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 APOBEC3FQ8IUX4 373 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 ATP8B4Q8TF62 1192 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 DDX1Q92499 740 aaKnown RBP10.84□□□□□ -0.67
VPS53-220ENST00000576149 CD101Q93033 1021 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 TATDN2Q93075 761 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 TRIM51Q9BSJ1 452 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 WNT8AQ9H1J5 351 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 DPH5Q9H2P9 285 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 TMBIM4Q9HC24 238 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 GTF3C4Q9UKN8 822 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 TRPC6Q9Y210 931 aa10.84□□□□□ -0.67
VPS53-220ENST00000576149 FAM187AA6NFU0 413 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 TMEM110-MUSTN1A8MSY1 372 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 H0YCG3 227 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ATMINO43313 823 aaPredicted RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 GRIN3BO60391 1043 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 DLATP10515 647 aaKnown RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 ABCD1P33897 745 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 COPB2P35606 906 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 GCNT1Q02742 428 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 KCTD19Q17RG1 926 aaPredicted RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 XKR3Q5GH77 459 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 DUPD1Q68J44 220 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 AADACL2Q6P093 401 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 MIS18BP1Q6P0N0 1132 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ENOSF1Q7L5Y1 443 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 TMC3Q7Z5M5 1100 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ADAT2Q7Z6V5 191 aaKnown RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 KLRG1Q96E93 195 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 IFT74Q96LB3 600 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ERP44Q9BS26 406 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 POLR3FQ9H1D9 316 aaPredicted RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS53-220ENST00000576149 RSPH14Q9UHP6 348 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ZC3H11AO75152 810 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS53-220ENST00000576149 GGPS1O95749 300 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 SUPT20HL2P0C7V6 817 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 CTNNA1P35221 906 aaKnown RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 CLDN10P78369 228 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 SUPT20HL1Q3ZLR7 823 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 C15orf39Q6ZRI6 1047 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ZNF564Q8TBZ8 553 aaPredicted RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 DHX38Q92620 1227 aaKnown RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 KCNN1Q92952 543 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 ZNF653Q96CK0 615 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 BICD1Q96G01 975 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 FAM213AQ9BRX8 229 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 NUP85Q9BW27 656 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 TRAIPQ9BWF2 469 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 HOXC10Q9NYD6 342 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 UVRAGQ9P2Y5 699 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 LCMT1Q9UIC8 334 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 RRP15Q9Y3B9 282 aaKnown RBP10.83□□□□□ -0.68
VPS53-220ENST00000576149 ARID2Q68CP9 1835 aa10.83□□□□□ -0.68
VPS53-220ENST00000576149 GOLGA6L10A6NI86 522 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 SPDYE16A6NNV3 312 aaPredicted RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 EXTL3O43909 919 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PHF2O75151 1096 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 MYZAPP0CAP1 466 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 NR1D1P20393 614 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 CTNNA2P26232 953 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 CHRNA3P32297 505 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ATP1A2P50993 1020 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 DRG2P55039 364 aaKnown RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 SP2Q02086 613 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 ZNF844Q08AG5 666 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 MTERF2Q49AM1 385 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 TTC19Q6DKK2 380 aaPredicted RBP10.82□□□□□ -0.68
VPS53-220ENST00000576149 ACAD10Q6JQN1 1059 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 PRELID2Q8N945 189 aa10.82□□□□□ -0.68
VPS53-220ENST00000576149 UBLCP1Q8WVY7 318 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms