RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 AGBL1Q96MI9 1066 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 NSRP1Q9H0G5 558 aaKnown RBP18.31■□□□□ 0.52
VPS53-215ENST00000573028 STMN4Q9H169 189 aaPredicted RBP18.31■□□□□ 0.52
VPS53-215ENST00000573028 TMEM206Q9H813 350 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 CHST7Q9NS84 486 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 ANAPC7Q9UJX3 599 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 MRPL11Q9Y3B7 192 aaKnown RBP18.31■□□□□ 0.52
VPS53-215ENST00000573028 TAF1LQ8IZX4 1826 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 C10orf71Q711Q0 1435 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 RFX1P22670 979 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 SSR1P43307 286 aaKnown RBP18.31■□□□□ 0.52
VPS53-215ENST00000573028 FMO1Q01740 532 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 STRIP1Q5VSL9 837 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 LDHDQ86WU2 507 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 SLC9A9Q8IVB4 645 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 IL31RAQ8NI17 732 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 PI4K2AQ9BTU6 479 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 KCNH7Q9NS40 1196 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 NOCTQ9UK39 431 aaKnown RBP18.31■□□□□ 0.52
VPS53-215ENST00000573028 PCDHA3Q9Y5H8 950 aa18.31■□□□□ 0.52
VPS53-215ENST00000573028 SSTR3P32745 418 aaPredicted RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 AOC3Q16853 763 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 CCDC50Q8IVM0 306 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 ART4Q93070 314 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 HOMER3Q9NSC5 361 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 TCEAL9Q9UHQ7 104 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 CNOT7Q9UIV1 285 aaKnown RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 ASAP2O43150 1006 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 ECM2O94769 699 aaPredicted RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 UBOX5O94941 541 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 VIL1P09327 827 aaKnown RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 PDE6CP51160 858 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 PREPLQ4J6C6 727 aaPredicted RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 PLA2G4FQ68DD2 849 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 PIGWQ7Z7B1 504 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 KIRREL3Q8IZU9 778 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 GJD4Q96KN9 370 aaPredicted RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 CYP11B1P15538 503 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 MFAP3P55082 362 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 KIF2BQ8N4N8 673 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 PAIP2Q9BPZ3 127 aaKnown RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 GLIS2Q9BZE0 524 aaPredicted RBP18.3■□□□□ 0.52
VPS53-215ENST00000573028 NOD2Q9HC29 1040 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 AGAP1Q9UPQ3 857 aa18.3■□□□□ 0.52
VPS53-215ENST00000573028 GH1P01241 217 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 MAPK4P31152 587 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 ADCY8P40145 1251 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 FAM71AQ8IYT1 594 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 P3H4Q92791 437 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 THOC1Q96FV9 657 aaKnown RBP18.29■□□□□ 0.52
VPS53-215ENST00000573028 RUNDC3BQ96NL0 473 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 KCND2Q9NZV8 630 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 THAP12O43422 761 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 DNAJC8O75937 253 aaPredicted RBP18.29■□□□□ 0.52
VPS53-215ENST00000573028 MMP10P09238 476 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 GHRP10912 638 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 GBP1P32455 592 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 RARRES1P49788 294 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 HADHBP55084 474 aaKnown RBP18.29■□□□□ 0.52
VPS53-215ENST00000573028 SNRNP35Q16560 246 aaKnown RBP18.29■□□□□ 0.52
VPS53-215ENST00000573028 TAS1R2Q8TE23 839 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 CHURC1Q8WUH1 139 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 MXRA8Q9BRK3 442 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 SCAF8Q9UPN6 1271 aaKnown RBP18.29■□□□□ 0.52
VPS53-215ENST00000573028 STK38LQ9Y2H1 464 aa18.29■□□□□ 0.52
VPS53-215ENST00000573028 ATP6V1G2O95670 118 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 SOX10P56693 466 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 ZFYVE27Q5T4F4 411 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 PRUNE1Q86TP1 453 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 CD101Q93033 1021 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 VEZTQ9HBM0 779 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 A1CFQ9NQ94 594 aaKnown RBP18.28■□□□□ 0.52
VPS53-215ENST00000573028 L3MBTL1Q9Y468 752 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 GREB1LQ9C091 1923 aaPredicted RBP18.28■□□□□ 0.52
VPS53-215ENST00000573028 GSTTP1A0A1W2PQM5 241 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 GGPS1O95749 300 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 P4HBP07237 508 aaKnown RBP18.28■□□□□ 0.52
VPS53-215ENST00000573028 PLS3P13797 630 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 KCNJ2P63252 427 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 SIX1Q15475 284 aaPredicted RBP18.28■□□□□ 0.52
VPS53-215ENST00000573028 CDAN1Q8IWY9 1227 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 KCTD17Q8N5Z5 321 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 CPA5Q8WXQ8 436 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 CCPG1Q9ULG6 757 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 ITGA8P53708 1063 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 XKR9Q5GH70 373 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 LMBRD2Q68DH5 695 aaPredicted RBP18.28■□□□□ 0.52
VPS53-215ENST00000573028 CC2D2BQ6DHV5 1058 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 STRA6Q9BX79 667 aa18.28■□□□□ 0.52
VPS53-215ENST00000573028 NFIBO00712 420 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 SNX3O60493 162 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 MYCLP12524 364 aaPredicted RBP18.27■□□□□ 0.52
VPS53-215ENST00000573028 GZMAP12544 262 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 ALAS1P13196 640 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 BRAFP15056 766 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 TRAF1Q13077 416 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 ITIH4Q14624 930 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 SRRM1Q8IYB3 904 aaKnown RBP18.27■□□□□ 0.52
VPS53-215ENST00000573028 C9orf72Q96LT7 481 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 AAASQ9NRG9 546 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms