RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TEPSINQ96N21 525 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 RAB20Q9NX57 234 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 KCNA3P22001 575 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 CXCL9Q07325 125 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 DMP1Q13316 513 aaPredicted RBP24.46■■□□□ 1.51
VPS53-211ENST00000571805 C6orf89Q6UWU4 347 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 FBXL13Q8NEE6 735 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 KAT2BQ92831 832 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 ZNF653Q96CK0 615 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 NT5C1BQ96P26 610 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 KMT5AQ9NQR1 393 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 UVRAGQ9P2Y5 699 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 OTUD6BQ8N6M0 293 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 SPIRE2Q8WWL2 714 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 RAPGEF5Q92565 580 aa24.46■■□□□ 1.51
VPS53-211ENST00000571805 MOV10L1Q9BXT6 1211 aaKnown RBP24.46■■□□□ 1.51
VPS53-211ENST00000571805 TESPA1A2RU30 521 aaPredicted RBP24.45■■□□□ 1.51
VPS53-211ENST00000571805 KIAA0754O94854 1291 aa24.45■■□□□ 1.51
VPS53-211ENST00000571805 GBP1P32455 592 aa24.45■■□□□ 1.51
VPS53-211ENST00000571805 COILP38432 576 aaPredicted RBP24.45■■□□□ 1.51
VPS53-211ENST00000571805 DHX38Q92620 1227 aaKnown RBP24.45■■□□□ 1.51
VPS53-211ENST00000571805 VPS33BQ9H267 617 aa24.45■■□□□ 1.51
VPS53-211ENST00000571805 SPOPO43791 374 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 RARAP10276 462 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 GTF2H1P32780 548 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 PDE6CP51160 858 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 SOX10P56693 466 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 CYP24A1Q07973 514 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 ARHGEF16Q5VV41 709 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 ACAD10Q6JQN1 1059 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 SV2AQ7L0J3 742 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 NIM1KQ8IY84 436 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 RDM1Q8NG50 284 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 TATDN2Q93075 761 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 ELMO3Q96BJ8 720 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 MYOZ2Q9NPC6 264 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 TCEAL9Q9UHQ7 104 aa24.45■■□□□ 1.5
VPS53-211ENST00000571805 TULP1O00294 542 aaPredicted RBP24.44■■□□□ 1.5
VPS53-211ENST00000571805 STBD1O95210 358 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 HOOK3Q86VS8 718 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 SENP7Q9BQF6 1050 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 PCDHA10Q9Y5I2 948 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 ZNF862O60290 1169 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 FNTAP49354 379 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 BYSLQ13895 437 aaKnown RBP24.44■■□□□ 1.5
VPS53-211ENST00000571805 DENND2CQ68D51 928 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 NSMFQ6X4W1 530 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 PSPC1Q8WXF1 523 aaKnown RBP24.44■■□□□ 1.5
VPS53-211ENST00000571805 KIFAP3Q92845 792 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 PGM2Q96G03 612 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 SEMA4AQ9H3S1 761 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 PARP2Q9UGN5 583 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 MTUS1Q9ULD2 1270 aa24.44■■□□□ 1.5
VPS53-211ENST00000571805 SLC29A2Q14542 456 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 QPCTQ16769 361 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 UBAP2Q5T6F2 1119 aaKnown RBP24.43■■□□□ 1.5
VPS53-211ENST00000571805 VSIG10LQ86VR7 867 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 C12orf50Q8NA57 414 aaPredicted RBP24.43■■□□□ 1.5
VPS53-211ENST00000571805 CNOT10Q9H9A5 744 aaKnown RBP24.43■■□□□ 1.5
VPS53-211ENST00000571805 C17orf75Q9HAS0 396 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 DDX20Q9UHI6 824 aaKnown RBP24.43■■□□□ 1.5
VPS53-211ENST00000571805 CNOT7Q9UIV1 285 aaKnown RBP24.43■■□□□ 1.5
VPS53-211ENST00000571805 PNMA2Q9UL42 364 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 ADGRA3Q8IWK6 1321 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 ZBED4O75132 1171 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 FSBPO95073 299 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 RWDD2BP57060 319 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 POMGNT1Q8WZA1 660 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 WNK4Q96J92 1243 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 EFCC1Q9HA90 598 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 RIPK3Q9Y572 518 aa24.43■■□□□ 1.5
VPS53-211ENST00000571805 C5orf60A6NFR6 353 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 CLEC16AQ2KHT3 1053 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 CCDC105Q8IYK2 499 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 ART4Q93070 314 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 CEP170P1Q96L14 293 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 RUNDC3BQ96NL0 473 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 PDGFDQ9GZP0 370 aaPredicted RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 RPAP3Q9H6T3 665 aaPredicted RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 PDLIM7Q9NR12 457 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 GABBR1Q9UBS5 961 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 ARID2Q68CP9 1835 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 VWA5AO00534 786 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 CTNND1O60716 968 aaKnown RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 DPEP1P16444 411 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 IFT88Q13099 833 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 MTMR2Q13614 643 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 BAATQ14032 418 aaPredicted RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 XRRA1Q6P2D8 792 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 OTUD6AQ7L8S5 288 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 MDM1Q8TC05 714 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 CENPTQ96BT3 561 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 LRRC19Q9H756 370 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 STK32BQ9NY57 414 aa24.42■■□□□ 1.5
VPS53-211ENST00000571805 MTRF1LQ9UGC7 380 aaKnown RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 CTDP1Q9Y5B0 961 aaPredicted RBP24.42■■□□□ 1.5
VPS53-211ENST00000571805 PARP14Q460N5 1801 aa24.41■■□□□ 1.5
VPS53-211ENST00000571805 KCNJ1P48048 391 aa24.41■■□□□ 1.5
VPS53-211ENST00000571805 ZNF772Q68DY9 489 aaPredicted RBP24.41■■□□□ 1.5
VPS53-211ENST00000571805 NLRX1Q86UT6 975 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms