RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SF3B1O75533 1304 aaKnown RBP eCLIP18.62■□□□□ 0.573e-9■■■■■ 164.7
CLN3-231ENST00000568422 CLUHO75153 1309 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 ACKR2O00590 384 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 HSP90AA2PQ14568 343 aaPredicted RBP18.61■□□□□ 0.57
CLN3-231ENST00000568422 ZNF174Q15697 407 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 TMEM132AQ24JP5 1023 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 POTEGQ6S5H5 508 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 CCDC83Q8IWF9 413 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 DEPTORQ8TB45 409 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 RIN2Q8WYP3 895 aaPredicted RBP18.61■□□□□ 0.57
CLN3-231ENST00000568422 SMG7Q92540 1137 aaKnown RBP18.61■□□□□ 0.57
CLN3-231ENST00000568422 NXPE3Q969Y0 559 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 ZSCAN31Q96LW9 406 aaPredicted RBP18.61■□□□□ 0.57
CLN3-231ENST00000568422 PDZD7Q9H5P4 517 aa18.61■□□□□ 0.57
CLN3-231ENST00000568422 TGM5O43548 720 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 PRKCBP05771 671 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 THP07101 528 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 FXR2P51116 673 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLN3-231ENST00000568422 EFNA5P52803 228 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 GNL2Q13823 731 aaKnown RBP18.6■□□□□ 0.57
CLN3-231ENST00000568422 TTC38Q5R3I4 469 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 LILRA6Q6PI73 481 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 PALB2Q86YC2 1186 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 NOSTRINQ8IVI9 506 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 TMEM105Q8N8V8 129 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 IFT74Q96LB3 600 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 CCDC113Q9H0I3 377 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 NT5C3AQ9H0P0 336 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 SH2B1Q9NRF2 756 aaPredicted RBP18.6■□□□□ 0.57
CLN3-231ENST00000568422 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLN3-231ENST00000568422 EPS15L1Q9UBC2 864 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 NOL7Q9UMY1 257 aaKnown RBP18.6■□□□□ 0.57
CLN3-231ENST00000568422 CACNA1HO95180 2353 aa18.6■□□□□ 0.57
CLN3-231ENST00000568422 ST18O60284 1047 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 RFPL2O75678 378 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 SEC24BO95487 1268 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 GBP2P32456 591 aaPredicted RBP18.59■□□□□ 0.57
CLN3-231ENST00000568422 ELAVL2Q12926 359 aaKnown RBP18.59■□□□□ 0.57
CLN3-231ENST00000568422 PDIA5Q14554 519 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 PDXDC1Q6P996 788 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 APBB1IPQ7Z5R6 666 aaPredicted RBP18.59■□□□□ 0.57
CLN3-231ENST00000568422 FAM184AQ8NB25 1140 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 BSNDQ8WZ55 320 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 KIFAP3Q92845 792 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 ZNF707Q96C28 371 aaPredicted RBP18.59■□□□□ 0.57
CLN3-231ENST00000568422 TTPALQ9BTX7 342 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 RAB34Q9BZG1 259 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 PIDD1Q9HB75 910 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 DOCK8Q8NF50 2099 aa18.59■□□□□ 0.57
CLN3-231ENST00000568422 H0Y858 1186 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 N4BP1O75113 896 aaKnown RBP18.58■□□□□ 0.56
CLN3-231ENST00000568422 RECQL4O94761 1208 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 SPATA31D3P0C874 917 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 CCT6AP40227 531 aaKnown RBP18.58■□□□□ 0.56
CLN3-231ENST00000568422 DCAF4L1Q3SXM0 396 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 SPATA31D4Q6ZUB0 917 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 B3GALT6Q96L58 329 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 PRKD2Q9BZL6 878 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 SNTG2Q9NY99 539 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 WNT16Q9UBV4 365 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 LRWD1Q9UFC0 647 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 FBXL21Q9UKT6 434 aa18.58■□□□□ 0.56
CLN3-231ENST00000568422 TTLL13PA6NNM8 815 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 PROB1E7EW31 1015 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 PTGESO14684 152 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 ZMYND10O75800 440 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 RTP2Q5QGT7 225 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 FAM171A1Q5VUB5 890 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 C4orf32Q8N8J7 132 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 FLCNQ8NFG4 579 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 PIK3R5Q8WYR1 880 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 RABGGTAQ92696 567 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 RTP3Q9BQQ7 232 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 PAAF1Q9BRP4 392 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 BHMT2Q9H2M3 363 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 FAM86C1Q9NVL1 165 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 ZFP37Q9Y6Q3 630 aaPredicted RBP18.57■□□□□ 0.56
CLN3-231ENST00000568422 TRIP11Q15643 1979 aa18.57■□□□□ 0.56
CLN3-231ENST00000568422 PHLPP2Q6ZVD8 1323 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 CASTOR2A6NHX0 329 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 GFRA3O60609 400 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 KIF4AO95239 1232 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 HNRNPA1P09651 372 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLN3-231ENST00000568422 LIG1P18858 919 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 AOC1P19801 751 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 U2AF2P26368 475 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLN3-231ENST00000568422 NAB2Q15742 525 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 GLYCTKQ8IVS8 523 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 KIAA1024Q9UPX6 916 aa18.56■□□□□ 0.56
CLN3-231ENST00000568422 VWA8A3KMH1 1905 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 K7ERI5 159 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 LAD1O00515 517 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 MYBP10242 640 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 LAMP2P13473 410 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 RPL17P18621 184 aaKnown RBP18.55■□□□□ 0.56
CLN3-231ENST00000568422 PSMD5Q16401 504 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 ECM1Q16610 540 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 CWF19L1Q69YN2 538 aaKnown RBP18.55■□□□□ 0.56
CLN3-231ENST00000568422 PRSS55Q6UWB4 352 aaPredicted RBP18.55■□□□□ 0.56
CLN3-231ENST00000568422 CEP57Q86XR8 500 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms