RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LYSMD2Q8IV50 215 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 VRK3Q8IV63 474 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 SLC41A1Q8IVJ1 513 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 ARHGEF19Q8IW93 802 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 CLRN3Q8NCR9 226 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 AGAP2Q99490 1192 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 ADI1Q9BV57 179 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 TOR3AQ9H497 397 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 RIOX1Q9H6W3 641 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 BCO1Q9HAY6 547 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 EDARQ9UNE0 448 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 TBX22Q9Y458 520 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 HS3ST4Q9Y661 456 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 FPGT-TNNI3KV9GXZ4 949 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 ZMYM3Q14202 1370 aa4.02□□□□□ -1.77
VPS35-207ENST00000568191 TMEM200CA6NKL6 621 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 AHRRA9YTQ3 701 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 TEX33O43247 280 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 NCR1O76036 304 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 CFBP00751 764 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 HKR1P10072 659 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 DDX6P26196 483 aaKnown RBP eCLIP4.01□□□□□ -1.77
VPS35-207ENST00000568191 ADSLP30566 484 aaPredicted RBP4.01□□□□□ -1.77
VPS35-207ENST00000568191 PDCD1Q15116 288 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 ATP2B3Q16720 1220 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 PRAMEF14Q5SWL7 426 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 HECTD2Q5U5R9 776 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 DPY19L2P1Q6NXN4 242 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 RNF180Q86T96 592 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 DRC7Q8IY82 874 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 OR7D4Q8NG98 312 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 RIN2Q8WYP3 895 aaPredicted RBP4.01□□□□□ -1.77
VPS35-207ENST00000568191 PHACTR3Q96KR7 559 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 MLST8Q9BVC4 326 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 ACE2Q9BYF1 805 aaPredicted RBP4.01□□□□□ -1.77
VPS35-207ENST00000568191 SERHL2Q9H4I8 314 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 GREM2Q9H772 168 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 IFT122Q9HBG6 1241 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 RBM12Q9NTZ6 932 aaKnown RBP4.01□□□□□ -1.77
VPS35-207ENST00000568191 NOX1Q9Y5S8 564 aa4.01□□□□□ -1.77
VPS35-207ENST00000568191 CENPVL1A0A0U1RR11 272 aa4□□□□□ -1.77
VPS35-207ENST00000568191 LEFTY2O00292 366 aa4□□□□□ -1.77
VPS35-207ENST00000568191 TMEM127O75204 238 aa4□□□□□ -1.77
VPS35-207ENST00000568191 ENDOD1O94919 500 aa4□□□□□ -1.77
VPS35-207ENST00000568191 FOSP01100 380 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 LMNAP02545 664 aaKnown RBP4□□□□□ -1.77
VPS35-207ENST00000568191 ZSCAN20P17040 1043 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 KRT4P19013 534 aa4□□□□□ -1.77
VPS35-207ENST00000568191 NR4A1P22736 598 aa4□□□□□ -1.77
VPS35-207ENST00000568191 CANXP27824 592 aaKnown RBP4□□□□□ -1.77
VPS35-207ENST00000568191 ZEB1P37275 1124 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 SP140Q13342 867 aa4□□□□□ -1.77
VPS35-207ENST00000568191 ABHD17BQ5VST6 288 aa4□□□□□ -1.77
VPS35-207ENST00000568191 FOXR2Q6PJQ5 311 aa4□□□□□ -1.77
VPS35-207ENST00000568191 ZNF575Q86XF7 245 aa4□□□□□ -1.77
VPS35-207ENST00000568191 THNSL2Q86YJ6 484 aa4□□□□□ -1.77
VPS35-207ENST00000568191 CMTR2Q8IYT2 770 aaKnown RBP4□□□□□ -1.77
VPS35-207ENST00000568191 LILRA3Q8N6C8 439 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 UBR7Q8N806 425 aa4□□□□□ -1.77
VPS35-207ENST00000568191 SLC9A6Q92581 669 aa4□□□□□ -1.77
VPS35-207ENST00000568191 CYFIP2Q96F07 1278 aa4□□□□□ -1.77
VPS35-207ENST00000568191 COQ10AQ96MF6 247 aa4□□□□□ -1.77
VPS35-207ENST00000568191 WDR11Q9BZH6 1224 aa4□□□□□ -1.77
VPS35-207ENST00000568191 SENP6Q9GZR1 1112 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 ZNF768Q9H5H4 540 aaKnown RBP4□□□□□ -1.77
VPS35-207ENST00000568191 TMEM140Q9NV12 185 aa4□□□□□ -1.77
VPS35-207ENST00000568191 ANKFY1Q9P2R3 1169 aa4□□□□□ -1.77
VPS35-207ENST00000568191 USP15Q9Y4E8 981 aaPredicted RBP4□□□□□ -1.77
VPS35-207ENST00000568191 WASHC2AQ641Q2 1341 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 ZAR1LA6NP61 321 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 POMCP01189 267 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 ATP5JP18859 108 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 ID4P47928 161 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 SCAND1P57086 179 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 MUM1Q2TAK8 710 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 MST1LQ2TV78 715 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 BEAN1Q3B7T3 259 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 KRTAP15-1Q3LI76 137 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 ANKS6Q68DC2 871 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 SDE2Q6IQ49 451 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 Q6ZPA2 131 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 ZNF572Q7Z3I7 529 aaPredicted RBP3.99□□□□□ -1.77
VPS35-207ENST00000568191 PQLC1Q8N2U9 271 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 RNF169Q8NCN4 708 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 CPEB3Q8NE35 698 aaKnown RBP3.99□□□□□ -1.77
VPS35-207ENST00000568191 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.99□□□□□ -1.77
VPS35-207ENST00000568191 NELL1Q92832 810 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 AHCYL2Q96HN2 611 aaKnown RBP3.99□□□□□ -1.77
VPS35-207ENST00000568191 QRSL1Q9H0R6 528 aaKnown RBP3.99□□□□□ -1.77
VPS35-207ENST00000568191 LANCL2Q9NS86 450 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 DNAJC28Q9NX36 388 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 CHST2Q9Y4C5 530 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 COL4A3Q01955 1670 aa3.99□□□□□ -1.77
VPS35-207ENST00000568191 DRGXA6NNA5 263 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 FAM171A2A8MVW0 826 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RAP2AP10114 183 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 ALAS1P13196 640 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 MASP1P48740 699 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 CHN2P52757 468 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RAP2BP61225 183 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms