RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CHST7Q9NS84 486 aa11.34□□□□□ -0.59
CLK3-205ENST00000561673 CACNG4Q9UBN1 327 aa11.34□□□□□ -0.59
CLK3-205ENST00000561673 SSX2IPQ9Y2D8 614 aa11.34□□□□□ -0.59
CLK3-205ENST00000561673 NR2E1Q9Y466 385 aa11.34□□□□□ -0.59
CLK3-205ENST00000561673 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.34□□□□□ -0.59
CLK3-205ENST00000561673 VWA3AA6NCI4 1184 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 CCDC169A6NNP5 214 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 PTGESO14684 152 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 TEX28O15482 410 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 TADA2AO75478 443 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 RECQL4O94761 1208 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 MTHFRP42898 656 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 GLUD2P49448 558 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 PEX3P56589 373 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 DSG1Q02413 1049 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 ATAT1Q5SQI0 421 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 HYIQ5T013 277 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 ATF7IP2Q5U623 682 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 TMC5Q6UXY8 1006 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 B3GALT6Q96L58 329 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 PNMA5Q96PV4 448 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 PLIN2Q99541 437 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 ADPGKQ9BRR6 497 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 RXFP1Q9HBX9 757 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 ADAM28Q9UKQ2 775 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 GDAQ9Y2T3 454 aa11.33□□□□□ -0.6
CLK3-205ENST00000561673 ARIH1Q9Y4X5 557 aaPredicted RBP11.33□□□□□ -0.6
CLK3-205ENST00000561673 CASTOR2A6NHX0 329 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 SFI1A8K8P3 1242 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 C2CD4DB7Z1M9 353 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 THP07101 528 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 ADH1AP07327 375 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 PLA2G5P39877 138 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 MAPK7Q13164 816 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 DMP1Q13316 513 aaPredicted RBP11.32□□□□□ -0.6
CLK3-205ENST00000561673 TUSC3Q13454 348 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 HSP90AA2PQ14568 343 aaPredicted RBP11.32□□□□□ -0.6
CLK3-205ENST00000561673 NAB2Q15742 525 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 USP41Q3LFD5 358 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 DCAF4L1Q3SXM0 396 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 ARL6IP4Q66PJ3 421 aaKnown RBP11.32□□□□□ -0.6
CLK3-205ENST00000561673 KIAA1841Q6NSI8 718 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 FUT10Q6P4F1 479 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 TRIM67Q6ZTA4 783 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 TAS1R3Q7RTX0 852 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 GPR149Q86SP6 731 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 SPDYE1Q8NFV5 336 aaPredicted RBP11.32□□□□□ -0.6
CLK3-205ENST00000561673 FAM122AQ96E09 287 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 DRC1Q96MC2 740 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 ACO2Q99798 780 aaKnown RBP11.32□□□□□ -0.6
CLK3-205ENST00000561673 TMEM134Q9H6X4 195 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 SFXN1Q9H9B4 322 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 PTPRHQ9HD43 1115 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 MAN1C1Q9NR34 630 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 ARHGAP28Q9P2N2 729 aa11.32□□□□□ -0.6
CLK3-205ENST00000561673 TMEM221A6NGB7 291 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 M0R296 226 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 GLUD1P00367 558 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 SPATA31D3P0C874 917 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 MYBP10242 640 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 GUCY2CP25092 1073 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 SLC12A3P55017 1021 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 RAD51AP2Q09MP3 1159 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 CUL4AQ13619 759 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 PTPN21Q16825 1174 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 SPATA31D4Q6ZUB0 917 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 PALB2Q86YC2 1186 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 SYT2Q8N9I0 419 aaPredicted RBP11.31□□□□□ -0.6
CLK3-205ENST00000561673 HASPINQ8TF76 798 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 RIN2Q8WYP3 895 aaPredicted RBP11.31□□□□□ -0.6
CLK3-205ENST00000561673 MFSD14AQ96MC6 490 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 NTPCRQ9BSD7 190 aaKnown RBP11.31□□□□□ -0.6
CLK3-205ENST00000561673 TIPINQ9BVW5 301 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 NT5C3AQ9H0P0 336 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 C17orf75Q9HAS0 396 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 KMT5AQ9NQR1 393 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 DAXXQ9UER7 740 aaPredicted RBP11.31□□□□□ -0.6
CLK3-205ENST00000561673 TNFSF13BQ9Y275 285 aa11.31□□□□□ -0.6
CLK3-205ENST00000561673 RBM19Q9Y4C8 960 aaKnown RBP11.31□□□□□ -0.6
CLK3-205ENST00000561673 NPHP3-ACAD11A0A0J9YXS1 232 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 CCDC195A0A1B0GUA6 201 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 SLC16A4O15374 487 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 KIF4AO95239 1232 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 PLA2G4BP0C869 781 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 RPL17P18621 184 aaKnown RBP11.3□□□□□ -0.6
CLK3-205ENST00000561673 IGFBP6P24592 240 aaPredicted RBP11.3□□□□□ -0.6
CLK3-205ENST00000561673 SIGLEC14Q08ET2 396 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 TMEM119Q4V9L6 283 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 ARSHQ5FYA8 562 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 RTP2Q5QGT7 225 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 ALKAL1Q6UXT8 129 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 APBB1IPQ7Z5R6 666 aaPredicted RBP11.3□□□□□ -0.6
CLK3-205ENST00000561673 BMP8AQ7Z5Y6 402 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 GPR65Q8IYL9 337 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 KCTD17Q8N5Z5 321 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 KREMEN2Q8NCW0 462 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 PBXIP1Q96AQ6 731 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 ASIC4Q96FT7 647 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 CDK5RAP3Q96JB5 506 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 PPP1R10Q96QC0 940 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms