RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GOLGA8DPQ0D2H9 430 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 PSMD6Q15008 389 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 PKN2Q16513 984 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 EXOC3L4Q17RC7 722 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CBWD6Q4V339 395 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 FIGNQ5HY92 759 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CBWD3Q5JTY5 395 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CBWD5Q5RIA9 395 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 GBP6Q6ZN66 633 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 LRRC8AQ8IWT6 810 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 ZNF333Q96JL9 665 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 FAM207AQ9NSI2 230 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 TTC26A0AVF1 554 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 CHRNA1P02708 482 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 CTSHP09668 335 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 DLATP10515 647 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 AXLP30530 894 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 HOXA11P31270 313 aaPredicted RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 THPOP40225 353 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 TNFSF9P41273 254 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 GCLMP48507 274 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 ADKP55263 362 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 MYL7Q01449 175 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 MGAT3Q09327 533 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 BRSK2Q8IWQ3 736 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 THNSL1Q8IYQ7 743 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 TC2NQ8N9U0 490 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 NEK11Q8NG66 645 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 DHX38Q92620 1227 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 IQCDQ96DY2 449 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 POP1Q99575 1024 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 LSM14BQ9BX40 385 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 SEZ6LQ9BYH1 1024 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 TTYH3Q9C0H2 523 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 KCNF1Q9H3M0 494 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 AGPAT5Q9NUQ2 364 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 CPSF3Q9UKF6 684 aaKnown RBP12.18□□□□□ -0.46
USP3-218ENST00000560202 CAPN11Q9UMQ6 739 aa12.18□□□□□ -0.46
USP3-218ENST00000560202 FRMPD3Q5JV73 1810 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 RNF225M0QZC1 329 aaPredicted RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 EPHB6O15197 1021 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 P4HA2O15460 535 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 B4GALT4O60513 344 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 N4BP1O75113 896 aaKnown RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 MFAP3LO75121 409 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 SLC9A1P19634 815 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 PON1P27169 355 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 GTF2H1P32780 548 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 GTF2F1P35269 517 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP3-218ENST00000560202 WNT7BP56706 349 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 CLDN10P78369 228 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 LRMPQ12912 555 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 TRIM71Q2Q1W2 868 aaKnown RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 TAF3Q5VWG9 929 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 CNGA4Q8IV77 575 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 CEP120Q8N960 986 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 ARMC5Q96C12 935 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 FNBP1Q96RU3 617 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 ADPGKQ9BRR6 497 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 SENP6Q9GZR1 1112 aaPredicted RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 CRISPLD2Q9H0B8 497 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 TMEM117Q9H0C3 514 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 TRPV6Q9H1D0 765 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 PDE11AQ9HCR9 933 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 TOPORSQ9NS56 1045 aaPredicted RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 GCNT4Q9P109 453 aa12.17□□□□□ -0.46
USP3-218ENST00000560202 NOC2LQ9Y3T9 749 aaKnown RBP12.17□□□□□ -0.46
USP3-218ENST00000560202 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.17□□□□□ -0.46
USP3-218ENST00000560202 A0A1W2PQJ5 194 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 PMM2O15305 246 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 SGPL1O95470 568 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 STAG3L1P0CL83 205 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 KRT9P35527 623 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 MXI1P50539 228 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 CDK7P50613 346 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 OSTNP61366 133 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 CETN1Q12798 172 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 KYAT1Q16773 422 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 DCAF4L1Q3SXM0 396 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 KRT39Q6A163 491 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 NOTUMQ6P988 496 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 SLC27A1Q6PCB7 646 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 APBB1IPQ7Z5R6 666 aaPredicted RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 FAM228AQ86W67 206 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 U2AF1L4Q8WU68 220 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 CCDC51Q96ER9 411 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 TMEM8AQ9HCN3 771 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 PLCB1Q9NQ66 1216 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 PIN4Q9Y237 131 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 LUC7L2Q9Y383 392 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 TRIP12Q14669 1992 aaPredicted RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 CAND2O75155 1236 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 RPS6KA5O75582 802 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 NOL4O94818 638 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 TFRCP02786 760 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 CLTAP09496 248 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 ACTN1P12814 892 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 TNNI1P19237 187 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 KCNA4P22459 653 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 ZBED6P86452 979 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms