RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DSC2Q02487 901 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PTH1RQ03431 593 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MALLQ13021 153 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 HDAC1Q13547 482 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 HLTFQ14527 1009 aaKnown RBP eCLIP2.09□□□□□ -2.07
USP3-209ENST00000558925 NOMO1Q15155 1222 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 SAFBQ15424 915 aaKnown RBP eCLIP2.09□□□□□ -2.07
USP3-209ENST00000558925 STILQ15468 1287 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PGS1Q32NB8 556 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 WDR72Q3MJ13 1102 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 SLFN13Q68D06 897 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 XRRA1Q6P2D8 792 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 ABHD15Q6UXT9 468 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 Q6ZPA2 131 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 ARHGEF18Q6ZSZ5 1173 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CCDC149Q6ZUS6 474 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 ZNF627Q7L945 461 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CHST15Q7LFX5 561 aaPredicted RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 BHLHA9Q7RTU4 235 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PLEKHH3Q7Z736 793 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 DENND1CQ8IV53 801 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 KBTBD2Q8IY47 623 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CAMKK1Q8N5S9 505 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MSL3Q8N5Y2 521 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 SAMD3Q8N6K7 520 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CELF5Q8N6W0 485 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 CDYL2Q8N8U2 506 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PIK3C3Q8NEB9 887 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 VPS37AQ8NEZ2 397 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PLBD2Q8NHP8 589 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 SSH1Q8WYL5 1049 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 ZCCHC14Q8WYQ9 949 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 LARP4BQ92615 738 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 RPGRQ92834 1020 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 ZG16BQ96DA0 208 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 YTHDC1Q96MU7 727 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 GNRHR2Q96P88 292 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CGRRF1Q99675 332 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 BTBD2Q9BX70 525 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 NAA15Q9BXJ9 866 aaKnown RBP2.09□□□□□ -2.07
USP3-209ENST00000558925 HAPLN2Q9GZV7 340 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 WNT8AQ9H1J5 351 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 BHMT2Q9H2M3 363 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 LDAHQ9H6V9 325 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 MAN1C1Q9NR34 630 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 KCND1Q9NSA2 647 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 KCMF1Q9P0J7 381 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 FTSJ1Q9UET6 329 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 STAP2Q9UGK3 403 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 CDC42EP3Q9UKI2 254 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 PHTF1Q9UMS5 762 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 POLHQ9Y253 713 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 DAAM1Q9Y4D1 1078 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 NR2E3Q9Y5X4 410 aa2.09□□□□□ -2.07
USP3-209ENST00000558925 H0Y858 1186 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 H3BML4 177 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 AKR1B10O60218 316 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 B4GALT4O60513 344 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 PQBP1O60828 265 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 CNOT4O95628 575 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 LY86O95711 162 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ZBED1O96006 694 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 IFIT2P09913 472 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 COL6A1P12109 1028 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ADSLP30566 484 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 MCM7P33993 719 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 SLC6A9P48067 706 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 CD69Q07108 199 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 MGAT2Q10469 447 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 NFATC3Q12968 1075 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 TARDBPQ13148 414 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP3-209ENST00000558925 PICALMQ13492 652 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ACAP1Q15027 740 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 PRKD1Q15139 912 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 DGKDQ16760 1214 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 LONRF1Q17RB8 773 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 KIAA0753Q2KHM9 967 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 LSM12Q3MHD2 195 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 MUM1L1Q5H9M0 696 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 TMEM200BQ69YZ2 307 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 GRAMD4Q6IC98 578 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 TCTN3Q6NUS6 607 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 BTNL9Q6UXG8 535 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 NPNTQ6UXI9 565 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 Q6ZVL8 140 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 LARP4Q71RC2 724 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP3-209ENST00000558925 OTOP2Q7RTS6 562 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 BMP8AQ7Z5Y6 402 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 MORC1Q86VD1 984 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ZC3H18Q86VM9 953 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 GLB1L2Q8IW92 636 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 KIAA0319LQ8IZA0 1049 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 SPICE1Q8N0Z3 855 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP3-209ENST00000558925 NTN5Q8WTR8 489 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 HOXB13Q92826 284 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 NKD2Q969F2 451 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 RGMAQ96B86 450 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 C1GALT1C1Q96EU7 318 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 DYDC2Q96IM9 177 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms